Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_O09
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 46 6e-06
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 46 6e-06
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 46 8e-06
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 45 2e-05
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 36 0.006
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 33 0.043
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 33 0.043
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 29 0.93
01_05_0073 - 17899175-17899756 27 3.8
06_01_1018 - 7964752-7964847,7964976-7967048 26 6.6
03_02_1003 - 13127251-13128468 26 6.6
11_04_0448 - 17834712-17834809,17835570-17835622,17835721-178357... 26 8.7
04_04_0756 - 27817846-27819224,27819961-27820093,27820440-278205... 26 8.7
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 26 8.7
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 46.4 bits (105), Expect = 6e-06
Identities = 22/42 (52%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = +2
Query: 89 KIGINGFGRIGRLVLRASIE-KGAQVVAINDPSSVLTIWLTF 211
KIGINGFGRIGRLV R +++ + ++VA+NDP + T ++T+
Sbjct: 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDP-FITTDYMTY 45
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 46.4 bits (105), Expect = 6e-06
Identities = 22/33 (66%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Frame = +2
Query: 86 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDP 181
+K+GINGFGRIGRLVLR A+ +VVA+NDP
Sbjct: 139 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDP 171
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 210 FQVXXPHGRFKGXVKVQDES-FWLTGKNCRFSQK 308
F+ HG FKG +KV D+S + GK + K
Sbjct: 182 FKYDSTHGPFKGSIKVVDDSTLEINGKKVTITSK 215
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 46.0 bits (104), Expect = 8e-06
Identities = 22/33 (66%), Positives = 27/33 (81%), Gaps = 1/33 (3%)
Frame = +2
Query: 86 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDP 181
+K+GINGFGRIGRLVLR A+ +VVA+NDP
Sbjct: 80 TKVGINGFGRIGRLVLRIATNRDDIEVVAVNDP 112
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 210 FQVXXPHGRFKGXVKVQDES-FWLTGKNCRFSQK 308
F+ HG FKG +KV DES + GK + K
Sbjct: 123 FKYDSTHGPFKGTIKVVDESTLEINGKKISVTSK 156
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/32 (62%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Frame = +2
Query: 89 KIGINGFGRIGRLVLRASIEK-GAQVVAINDP 181
KIGINGFGRIGRLV R +++ ++VA+NDP
Sbjct: 5 KIGINGFGRIGRLVARVALQSDDVELVAVNDP 36
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +2
Query: 104 GFGRIGRLVLRASIE-KGAQVVAINDPSSVLTIWLTF 211
GFGRIGRLV R +++ + ++VA+NDP + T ++T+
Sbjct: 15 GFGRIGRLVARVALQSEDVELVAVNDP-FITTEYMTY 50
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 33.5 bits (73), Expect = 0.043
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +2
Query: 89 KIGINGFGRIGRLVLRASIEKG----AQVVAINDPSSV 190
K+ INGFGRIGR LR +G V+AIND V
Sbjct: 68 KVAINGFGRIGRNFLRCWHGRGDSSPLDVIAINDTGGV 105
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 33.5 bits (73), Expect = 0.043
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 74 ADNMSKIGINGFGRIGRLVLRASIEK---GAQVVAINDPSSV 190
A+ K+ INGFGRIGR LR E+ +VV +ND V
Sbjct: 74 AEAKLKVAINGFGRIGRNFLRCWHERENSPLEVVVVNDSGGV 115
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 29.1 bits (62), Expect = 0.93
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 98 INGFGRIGRLVLRASIEKGAQVVAIND 178
I GFG +G R EKG +V+A+ D
Sbjct: 211 IQGFGNVGSWAARIIHEKGGKVIALGD 237
>01_05_0073 - 17899175-17899756
Length = 193
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = -3
Query: 313 GXFWENRQFFPVNQKDSS*TLTLPLKRPWGXXTWKG*PYSQDR*RVIYSDHLSSLFNRST 134
G W R P +S LP+K W W+G ++ S + ++F+ S
Sbjct: 3 GGRWRRRLLSPPTATRTSPKTNLPIKALWWCLVWRG----REEVSTALSQLVPTIFSMSM 58
Query: 133 EHQTANAAKSIDS 95
+ + ++++S+ S
Sbjct: 59 KVEKRSSSESMSS 71
>06_01_1018 - 7964752-7964847,7964976-7967048
Length = 722
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 77 DNMSKIGINGFGRIGRLVLRAS-IEKGAQVVAIN 175
D +G+ GFGR+ R VL AS E +VV+++
Sbjct: 373 DGKRLLGVGGFGRVYRGVLPASGTEVAVKVVSLS 406
>03_02_1003 - 13127251-13128468
Length = 405
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 71 LADNMSKIGINGF-GRIGRLVLRASIEKGAQVVAINDPSSVL 193
LA + + + + G G IGR V+R + +G VVA+ P S L
Sbjct: 68 LAPSETTVLVTGATGYIGRYVVRELLRRGHPVVAVARPRSGL 109
>11_04_0448 -
17834712-17834809,17835570-17835622,17835721-17835798,
17836020-17836295,17836400-17836543,17836636-17836750,
17836963-17837091,17837214-17837304
Length = 327
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 237 NGHGGXILGKVNHIVKTDEGSFIATT*APFSIEARSTKRPMR 112
NG LGK+ H+V D S + T P S+ A S R +R
Sbjct: 120 NGSIPAALGKMEHLVSLDLYSNLLTGTIPTSLGAMSRLRYLR 161
>04_04_0756 -
27817846-27819224,27819961-27820093,27820440-27820519,
27821378-27821609
Length = 607
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 111 PNPLIPIFDMLSASYRKFV 55
P PL + D LSASYR+ V
Sbjct: 334 PAPLAALLDKLSASYRRVV 352
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 122 RLVLRASI--EKGAQVVAINDPSSVLTIWLTFPSXXPPWPF*G 244
RL+L A++ A V DPS L +W + + PW G
Sbjct: 8 RLLLAAAVLCAAFAPVSGFTDPSDALGLWELYRTLDSPWQLSG 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,603
Number of Sequences: 37544
Number of extensions: 184533
Number of successful extensions: 396
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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