Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_O08
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 179 FNMRRNIGFHL 147
           FN+RR +G+HL
Sbjct: 207 FNLRRRLGYHL 217


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 365 ALDYTSYYFTEEELPKLSPNA 427
           A+    +  TEE+LPK S NA
Sbjct: 70  AISTGEWLLTEEKLPKTSSNA 90


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 408 PNFHLMLVHDPPEH 449
           P+ HLM +  PPEH
Sbjct: 51  PSTHLMDLSSPPEH 64


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 210 CERMCHCCLF 181
           C  +CHCC F
Sbjct: 743 CFALCHCCDF 752



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 390  LXKKSYPNFHLMLVHDPPEH 449
            L K S P   LML H PP +
Sbjct: 1253 LFKDSSPATALMLQHAPPAY 1272


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 363 RHWTTRAIILXK 398
           RH++TRAI++ K
Sbjct: 303 RHYSTRAIVIEK 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,220
Number of Sequences: 438
Number of extensions: 2069
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)