Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_O06
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    24   1.5  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   5.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   7.1  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   7.1  

>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect(2) = 1.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 483 FYFQKQLPGRFLWKLPWYWIQHGMMCIIPYY 575
           FY  K      LW L W W    +M + P Y
Sbjct: 444 FYVGKWSKPAALWSLVWMWFMI-LMLLFPQY 473



 Score = 21.8 bits (44), Expect(2) = 1.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 552 MMCIIPYYLLRLGG 593
           + C++ YYL ++GG
Sbjct: 493 VFCVVYYYLPKIGG 506


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 437 LFRIHLYLLNGPLLAFLFPETASRKIFVEAALVL 538
           L+ I+ Y+L+GP L        S  IF++A+LV+
Sbjct: 414 LYGIYQYVLSGPALLMPVRIIESLLIFLQASLVI 447


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 413 PPSKIVTALFRIHLYLLNGPLLAFLFPETASRKIFVEAALVLD 541
           PP KI    + +HL+LL+   L  ++P   +R     AA++L+
Sbjct: 125 PPVKICLLAYSVHLFLLHS--LRMIYPR--ARPTLYHAAVLLN 163


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 576 LLRLGGVYNIEPIRDFNWSVFS 641
           LL+L G  + + ++DFNW V S
Sbjct: 158 LLQLFGAASQDALQDFNWEVLS 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,515
Number of Sequences: 5004
Number of extensions: 61441
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)