Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_O06
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   3.2  
05_01_0234 - 1743784-1744017,1748103-1749068                           27   9.7  
04_01_0226 + 2842897-2842921,2843049-2843155,2843426-2843494,285...    27   9.7  

>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 323 FPFPIIVLKGLKAIVCRLCHFWCNPYQWVFLILDKSSL 210
           +P P ++L GL  +V    HFW +P +W  L+   + L
Sbjct: 90  WPSPYVLLCGLLLVVSLFEHFW-HPLKWFALVAAAAGL 126


>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 519 WKLPWYWIQHG---MMCIIPYYLLRL 587
           W+L W W  H    ++CI+P +L+ L
Sbjct: 154 WQLCWQWPWHALQLLLCILPLFLVSL 179


>04_01_0226 +
           2842897-2842921,2843049-2843155,2843426-2843494,
           2850676-2852745
          Length = 756

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 513 FLWKLPWYWIQHGMMCIIPYYLLR 584
           FL    W W+QH  +C+  +Y LR
Sbjct: 377 FLCARRWSWLQHVALCVGRWYQLR 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,376,026
Number of Sequences: 37544
Number of extensions: 332925
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)