Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_O06
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78417-12|CAO78731.1| 318|Caenorhabditis elegans Hypothetical p... 64 1e-10
Z78417-11|CAE17739.1| 294|Caenorhabditis elegans Hypothetical p... 64 1e-10
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 33 0.13
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 33 0.13
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 33 0.13
Z71185-1|CAA94903.1| 290|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF047658-6|AAY86253.1| 295|Caenorhabditis elegans Hypothetical ... 29 2.1
Z66494-2|CAA91257.1| 821|Caenorhabditis elegans Hypothetical pr... 28 4.9
>Z78417-12|CAO78731.1| 318|Caenorhabditis elegans Hypothetical
protein C35C5.10b protein.
Length = 318
Score = 63.7 bits (148), Expect = 1e-10
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Frame = +2
Query: 137 CAFFLTPQRKIIETIIVFLICVYLLVKTYPILKIPIDTDYTKSDRGGKRXXXXXXXXX-W 313
C +L ++ +E+I+ + + + IP+D +T R R +
Sbjct: 49 CMNYLPSWQRFLESIVFIPLSFWAAY-----MSIPLDCSFTLPTRNVSRYVILTVYSLIF 103
Query: 314 GMEIGFKFASHTVIYLLNPCHVTTLIQIYLLAAP-PSKIVTALFRIHLYLLNGPLLAFLF 490
G E+ +K S T I+LLNPCHVTT +Q+ LL SK LFR+ LY + G A F
Sbjct: 104 GAELAYKMISRTGIFLLNPCHVTTTMQLMLLTMEGTSKKACFLFRLMLYFMPGAWFALAF 163
Query: 491 PETASRKI 514
P +R +
Sbjct: 164 PILNTRNL 171
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 534 YWIQHGMMCIIPYYLLRLGGVYNIEPIRDFNWSVF 638
Y+ QH + ++P YL+ + G + E DF W+VF
Sbjct: 178 YYAQHVAILVVPVYLMYIQGAFEPEKPYDFGWTVF 212
>Z78417-11|CAE17739.1| 294|Caenorhabditis elegans Hypothetical
protein C35C5.10a protein.
Length = 294
Score = 63.7 bits (148), Expect = 1e-10
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Frame = +2
Query: 137 CAFFLTPQRKIIETIIVFLICVYLLVKTYPILKIPIDTDYTKSDRGGKRXXXXXXXXX-W 313
C +L ++ +E+I+ + + + IP+D +T R R +
Sbjct: 25 CMNYLPSWQRFLESIVFIPLSFWAAY-----MSIPLDCSFTLPTRNVSRYVILTVYSLIF 79
Query: 314 GMEIGFKFASHTVIYLLNPCHVTTLIQIYLLAAP-PSKIVTALFRIHLYLLNGPLLAFLF 490
G E+ +K S T I+LLNPCHVTT +Q+ LL SK LFR+ LY + G A F
Sbjct: 80 GAELAYKMISRTGIFLLNPCHVTTTMQLMLLTMEGTSKKACFLFRLMLYFMPGAWFALAF 139
Query: 491 PETASRKI 514
P +R +
Sbjct: 140 PILNTRNL 147
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 534 YWIQHGMMCIIPYYLLRLGGVYNIEPIRDFNWSVF 638
Y+ QH + ++P YL+ + G + E DF W+VF
Sbjct: 154 YYAQHVAILVVPVYLMYIQGAFEPEKPYDFGWTVF 188
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 195 IRNTIIVSIIFLWGVKKKAHYRAHISWDSFICTTIRPFEHFYNIFNSSILF 43
+R + V + L K + HY+AH++ S +R EH IFN++++F
Sbjct: 429 VRGKMEVKVEVLKNPKLEEHYKAHMNLLSTFGEDVRNNEHLMLIFNAAVIF 479
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 195 IRNTIIVSIIFLWGVKKKAHYRAHISWDSFICTTIRPFEHFYNIFNSSILF 43
+R + V + L K + HY+AH++ S +R EH IFN++++F
Sbjct: 428 VRGKMEVKVEVLKNPKLEEHYKAHMNLLSTFGEDVRNNEHLMLIFNAAVIF 478
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 195 IRNTIIVSIIFLWGVKKKAHYRAHISWDSFICTTIRPFEHFYNIFNSSILF 43
+R + V + L K + HY+AH++ S +R EH IFN++++F
Sbjct: 429 VRGKMEVKVEVLKNPKLEEHYKAHMNLLSTFGEDVRNNEHLMLIFNAAVIF 479
>Z71185-1|CAA94903.1| 290|Caenorhabditis elegans Hypothetical
protein C35A5.1 protein.
Length = 290
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 201 THIRNTIIVSIIFLWGVKKKAHYRAHISWDSFICTTIRPFEHFYNIFN 58
TH TI+V +F G H+ +SW +C + PFE + +F+
Sbjct: 55 THGLATIVVIAVF--GKISGGHFNPVVSWAMVLCQKLHPFELPFYMFS 100
>AF047658-6|AAY86253.1| 295|Caenorhabditis elegans Hypothetical
protein K03H6.6 protein.
Length = 295
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 143 FFLTPQRKIIETIIVFLICVYLL 211
FFL +RKI++TI +F C +L+
Sbjct: 243 FFLAFRRKILQTICIFCACYFLI 265
>Z66494-2|CAA91257.1| 821|Caenorhabditis elegans Hypothetical
protein C34C6.2 protein.
Length = 821
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 183 IIVSIIFLWGVKKKAHYRAHISWDSFICTTIRPFEHFYNIF 61
I VS+I L G+ K H R I D +CT+ PF F+ F
Sbjct: 740 ICVSMISLTGLNKH-HLRIGIIDDETVCTSECPFSPFFAKF 779
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,198
Number of Sequences: 27780
Number of extensions: 331030
Number of successful extensions: 826
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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