Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_N23
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    28   1.0  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.0  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    27   2.3  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    25   7.1  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.3  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 266  ILTYFQFDHRLSNLTINKEYIYICVCQIHDXVCQI 370
            +  ++  DHRL+ LT       + +CQIH   CQ+
Sbjct: 1066 VWAFWSPDHRLT-LTAYNHQTLLSICQIHKETCQM 1099


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 266 ILTYFQFDHRLSNLTINKEYIYICVCQIHD 355
           +L YF+   RLS   I+ +Y Y  VC+  D
Sbjct: 344 VLEYFRLSDRLSKRLISVDYDYATVCETLD 373


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 522 ANRRSMKFPTLIEYIEECRMLLFFRRMHKKYIKSIKXTLHTLSCI 388
           A RR   FPT +   E  ++ L  +  ++ Y+K +K   + L  +
Sbjct: 89  AARRVNDFPTAVRIFEGIKVKLPTKEQYQAYVKELKPVCNELGIV 133


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 525 YANRRSMKFPTLIEYIEECRMLLFFRRMHKKYIKSI 418
           Y    +M+F  L +      + LFF+ +H+ YIK++
Sbjct: 73  YVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTL 108


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 593  LFLYMRFRSYQPAPFFLL 646
            L L     SYQP+PFF+L
Sbjct: 1142 LALLFAIHSYQPSPFFVL 1159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,358
Number of Sequences: 5004
Number of extensions: 37866
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)