Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_N20
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 105 7e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 73 4e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 69 7e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 67 2e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 6e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 56 4e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 56 4e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 55 1e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 3e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 53 4e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 52 5e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 50 4e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 4e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 2e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 2e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 40 4e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 40 4e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 34 0.015
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 32 0.059
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.10
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 31 0.14
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.24
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 1.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 2.2
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 2.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 3.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 6.7
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 8.9
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 8.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 105 bits (251), Expect = 7e-24
Identities = 45/75 (60%), Positives = 58/75 (77%)
Frame = +1
Query: 391 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 570
G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++ G+ TGSGKT
Sbjct: 114 GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKT 173
Query: 571 LAYILPAIVHINNQP 615
L+Y LPAIVHIN QP
Sbjct: 174 LSYCLPAIVHINAQP 188
Score = 48.4 bits (110), Expect = 8e-07
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 252 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSG 392
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHG 114
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.5 bits (170), Expect = 4e-14
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = +1
Query: 391 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 570
G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L G+ +TGSGKT
Sbjct: 241 GDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKT 300
Query: 571 LAYILPAIVHINNQPPI 621
A+I+P I+ I+ PP+
Sbjct: 301 AAFIIPLIIAISKLPPL 317
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 68.5 bits (160), Expect = 7e-13
Identities = 29/66 (43%), Positives = 48/66 (72%)
Frame = +1
Query: 409 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 588
PI F+E + +++G+K YKEPTPIQA WP ++G+++ G+ +TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 589 AIVHIN 606
A+ ++N
Sbjct: 223 ALQYLN 228
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.9 bits (156), Expect = 2e-12
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +1
Query: 391 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 570
G++ P+ + + + ++GY++PT IQAQ P SG+++ GV +TGSGKT
Sbjct: 410 GIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKT 469
Query: 571 LAYILPAIVHINNQPPI 621
+A++LP HI +Q P+
Sbjct: 470 IAFLLPMFRHIKDQRPL 486
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.8 bits (136), Expect = 6e-10
Identities = 25/65 (38%), Positives = 41/65 (63%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 600
F+E D + + + +G+K PTPIQ + P+ ++ +++ G+ QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 601 INNQP 615
+ N P
Sbjct: 108 LWNNP 112
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 56.0 bits (129), Expect = 4e-09
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1
Query: 409 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 588
P+ F ++ Q +K GY +PTP+Q PI SG++L QTGSGKT ++ P
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFP 226
Query: 589 AI 594
+
Sbjct: 227 IL 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 56.0 bits (129), Expect = 4e-09
Identities = 27/90 (30%), Positives = 51/90 (56%)
Frame = +1
Query: 340 HHMKSKSIEINTR*L*VGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 519
+++ SK +E N R G + + F+ + + + G+K PTPIQ + P+
Sbjct: 46 NYIASKLLESNRRTK--GKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLL 103
Query: 520 MSGKNLXGVXQTGSGKTLAYILPAIVHINN 609
+ G+++ G+ +TGSGKT A+++P I H+ +
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKS 133
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 591
I+ F + + +Q+ +K MG++ T IQ + P ++G+++ G +TGSGKTLA+++P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 592 I 594
I
Sbjct: 148 I 148
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 53.2 bits (122), Expect = 3e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 600
F+ N + +G+ +G++ PT IQ + P+A+ GK++ G TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 601 INNQP 615
+ +P
Sbjct: 321 LLYRP 325
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 588
F+ N +++ V G+K+ TP+QA P+ + K+L TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.4 bits (120), Expect = 5e-08
Identities = 23/77 (29%), Positives = 44/77 (57%)
Frame = +1
Query: 391 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 570
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L +TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 571 LAYILPAIVHINNQPPI 621
AY++P + + Q I
Sbjct: 66 AAYLIPILELLLKQKQI 82
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.6 bits (113), Expect = 4e-07
Identities = 19/64 (29%), Positives = 40/64 (62%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 600
FE+ + G+ G++ P+PIQ + PIA+SG+++ + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 601 INNQ 612
++ +
Sbjct: 106 VDTK 109
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.0 bits (104), Expect = 4e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 591
+ +F E + +K + T IQ Q P A+ G+++ G +TGSGKTLA+I+P
Sbjct: 38 VDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPL 97
Query: 592 IVHI 603
I ++
Sbjct: 98 IENL 101
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVXQTGSGKTLAYIL 585
++ FEE + +G+ +M +++P+ IQ + P+ +S +N+ G Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 586 PAIVHINNQPP 618
+ ++ P
Sbjct: 173 TMLSRVDASVP 183
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 472 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 600
G+ +P PIQ+ P A G ++ G TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 2e-04
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 403 HNPIQYFEEANFPDYVQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAY 579
+NP+ EE FP+ + + +K E T IQ P S ++L TGSGKT+AY
Sbjct: 43 NNPVDPIEE--FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAY 100
Query: 580 ILPAIVHINNQPP 618
+ P + + P
Sbjct: 101 LFPILQKLQLHVP 113
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 600
F + ++ +K + EPT IQ + G+N G +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 601 INNQP 615
+ P
Sbjct: 69 WSKDP 73
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +1
Query: 406 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYIL 585
N + FEE N + + +G+ GY+ P+ +Q++ G+++ Q+G+GKT + +
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSI 77
Query: 586 PAIVHIN 606
+ I+
Sbjct: 78 GILQSID 84
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 34.3 bits (75), Expect = 0.015
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 469 MGYKEPTPIQAQGWPIAMS--GKNLXGVXQTGSGKTLAYILPAIVHINNQP 615
M PT IQ+ P ++ K+ QTGSGKTLAY+LP + + P
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLP 207
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 32.3 bits (70), Expect = 0.059
Identities = 14/65 (21%), Positives = 33/65 (50%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 591
I F++ N + +G+ G++ P+ IQ + + +++ Q+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 592 IVHIN 606
+ I+
Sbjct: 78 LQKID 82
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.5 bits (68), Expect = 0.10
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 532 NLXGVXQTGSGKTLAYILPAIVHINNQPP 618
NL V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.5 bits (68), Expect = 0.10
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 532 NLXGVXQTGSGKTLAYILPAIVHINNQPP 618
NL V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 409 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLXGVXQTGSGKTLAYIL 585
P + E A+ + + G+++ TP+Q + + + +N +TG+GKTLA++L
Sbjct: 36 PTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLL 95
Query: 586 PAIVHINNQPP 618
A + P
Sbjct: 96 VAFKDVLKGKP 106
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 520 MSGKNLXGVXQTGSGKTLAYILPAIV 597
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 511 PIAMSGKNLXGVXQTGSGKTLAYILPAI 594
P+ G ++ TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 435 ICFFKVLNRIMNLNAHLQLPRVYFYTLRLHMVI 337
I F VL+ + +N L L ++YFY R MVI
Sbjct: 85 ILLFGVLSTPITVNLGLTLFKLYFYNKRYDMVI 117
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 2.9
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -3
Query: 272 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 99
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 98 HDYFSDLVEDVYLNYGFFLXAGS 30
H+Y+++LV+ ++ F GS
Sbjct: 202 HEYYTELVKVKEASWPLFNSQGS 224
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 342 PYEVEEYRNKHEVTVS 389
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 317 WIIKVFVERLE*NRIPIWASHVLPSREF 234
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 472 PLSLHLVAHNQENL--LLQSIE 413
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 164 AEFVASSKFGTT-VSTAIIPITRHDYF 87
A F SS F T V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = -2
Query: 171 NYRRICCLLQIWNHRFHGYYSNYQT*LFFGFS*RCLFKLWILSXRRV--HLDH 19
NY I C L +WN Y +F + +++W+ V H DH
Sbjct: 180 NYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDH 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,505
Number of Sequences: 5004
Number of extensions: 50920
Number of successful extensions: 166
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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