Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_N07
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 160 1e-40
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 122 3e-29
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 107 1e-24
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 44 1e-05
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 36 0.004
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 34 0.015
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 33 0.026
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 32 0.061
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 32 0.081
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 31 0.11
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 31 0.11
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 31 0.19
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 31 0.19
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 31 0.19
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 30 0.33
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 30 0.33
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 30 0.33
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 30 0.33
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 29 0.43
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 29 0.57
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 29 0.57
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 29 0.57
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 29 0.57
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.57
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 29 0.75
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.00
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 1.3
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 28 1.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 1.3
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 28 1.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 2.3
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 27 2.3
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 3.0
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 26 4.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.3
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 5.3
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 7.0
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 7.0
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 7.0
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 9.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.3
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 160 bits (389), Expect = 1e-40
Identities = 77/138 (55%), Positives = 101/138 (73%), Gaps = 1/138 (0%)
Frame = +2
Query: 230 TKXEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFG-DISRDRVLELNASDE 406
++ VQVL++ L +LPH+LFYG PGTGKTS ILA +++LFG + + RVLELNASDE
Sbjct: 35 SQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNASDE 94
Query: 407 RGIQVVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXX 586
RGI ++R+KVK+FA+ TV+ K DG PCP +K++ILDEADSMT AQAAL
Sbjct: 95 RGISIIREKVKSFAKTTVTNK-VDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARI 153
Query: 587 XXFCLICNYVSXIIPPIT 640
FCLICNY++ II P++
Sbjct: 154 TRFCLICNYMTRIIDPLS 171
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 154 KTTNKKKPPAPWVEKYRPKTIDDIVDQ 234
KT + K PWVE YRPKT+D + Q
Sbjct: 10 KTEQEAKKSIPWVELYRPKTLDQVSSQ 36
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 122 bits (295), Expect = 3e-29
Identities = 60/133 (45%), Positives = 89/133 (66%)
Frame = +2
Query: 239 EVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQ 418
+++ L + +S +PH+LFYGPPGTGKTS ILA A++++G R++++ELNASD+RGI
Sbjct: 42 DIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRNQLMELNASDDRGID 101
Query: 419 VVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFC 598
VR+++K FA S ++ ++K++ILDEAD+MT AAQ AL FC
Sbjct: 102 AVREQIKNFA----STRQIF---ASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFC 154
Query: 599 LICNYVSXIIPPI 637
+ICNY++ I P I
Sbjct: 155 IICNYINKISPAI 167
Score = 31.1 bits (67), Expect = 0.14
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 184 PWVEKYRPKTIDDIV 228
PWVEKYRP ++D+V
Sbjct: 24 PWVEKYRPANLEDVV 38
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 107 bits (258), Expect = 1e-24
Identities = 61/133 (45%), Positives = 77/133 (57%)
Frame = +2
Query: 239 EVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQ 418
E + L+ G++PHL+ G PG GKT++IL A L G ++ VLELNASDERGI
Sbjct: 40 ETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGID 99
Query: 419 VVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFC 598
VVR+++KAFAQ V P +K++ILDEADSMT AQ AL F
Sbjct: 100 VVRNRIKAFAQKKVI------LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFA 153
Query: 599 LICNYVSXIIPPI 637
L CN + II PI
Sbjct: 154 LACNQSNKIIEPI 166
Score = 32.3 bits (70), Expect = 0.061
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 184 PWVEKYRPKTIDDIV 228
PWVEKYRP +DDIV
Sbjct: 22 PWVEKYRPIVLDDIV 36
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 44.4 bits (100), Expect = 1e-05
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 22/145 (15%)
Frame = +2
Query: 269 SGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDISR-------------DRVLELN-ASDE 406
S + PHLL YGP G GK + ++A ++L+G S + L++N S
Sbjct: 30 STNEFPHLLVYGPSGAGKKTRVVAILRELYGPGSEKLKIDQRTFLTPSSKKLQINIVSSL 89
Query: 407 RGIQVVRDKVKAFAQL--------TVSGKRADGRPCPSYKLVILDEADSMTTAAQAALXX 562
+++ V + ++ + D + +K+V+++ AD +T AQAAL
Sbjct: 90 HHLEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRR 149
Query: 563 XXXXXXXXXXFCLICNYVSXIIPPI 637
LI N S II PI
Sbjct: 150 TMEKYSNNIRLILIANSTSKIIEPI 174
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 293 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDER 409
L YGPPG+GKTS + A A +L DI + E +D+R
Sbjct: 246 LLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDR 284
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 34.3 bits (75), Expect = 0.015
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDKV----KAFAQLT 457
+L GPPG GKT+A AK + VLELNASD R +++ +++ + +
Sbjct: 412 VLLSGPPGIGKTTAAHLVAK-----LEGYDVLELNASDTRSKRLLDEQLFGVTDSQSLAG 466
Query: 458 VSGKRADGRPCPSYKLV-ILDEADSMTT 538
G +A+ +LV I+DE D M++
Sbjct: 467 YFGTKANPVDMAKSRLVLIMDEIDGMSS 494
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 33.5 bits (73), Expect = 0.026
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 293 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELN 394
L GPPGTGKT I+ L D+SR + N
Sbjct: 1149 LIQGPPGTGKTKTIIGIISALLVDLSRYHITRPN 1182
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 32.3 bits (70), Expect = 0.061
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 233 KXEVVQVLRECLSGGDLPHLLFYGPPGTGKT---SAILAAAKQLFGDIS 370
+ E+ Q LRE + G +L +GPPGTGKT A+ AK F IS
Sbjct: 401 RPELFQGLREPVQG-----MLLFGPPGTGKTMLARAVATEAKATFFSIS 444
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 31.9 bits (69), Expect = 0.081
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLEL-NASDERGIQVVRDKVKAFAQLT 457
+LF+GPPGTGKT A A + F + +L + E ++ + DK +A A
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCV 593
Query: 458 V 460
V
Sbjct: 594 V 594
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQ 352
+L YGPPGTGKT A A +
Sbjct: 261 ILMYGPPGTGKTLMARAVANE 281
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 272 GGDLPH-LLFYGPPGTGKTSAILAAAKQLFGDISR 373
G D P +L YGPPGTGKT + A A + R
Sbjct: 164 GIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIR 198
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQ 352
LL YGPPG GKT A AKQ
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQ 148
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 293 LFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASD 403
L +GPPGTGKT ++ +QL + R+L AS+
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQLV--LRNKRILVCGASN 263
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQ 352
+L YGPPGTGKT + A A +
Sbjct: 316 VLLYGPPGTGKTMVMRAVAAE 336
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQL 355
+L YGPPGTGKT A A +L
Sbjct: 691 VLLYGPPGTGKTLLAKAVATEL 712
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQL 355
+L YGPPGTGKT A A L
Sbjct: 169 VLLYGPPGTGKTLLARAVAASL 190
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 272 GGDLPH-LLFYGPPGTGKTSAILAAA 346
GG LP +L GPPGTGKT A A
Sbjct: 296 GGKLPRGVLLTGPPGTGKTMLARAVA 321
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 29.9 bits (64), Expect = 0.33
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLE-LNASDERGIQVVRDKVKAFA 448
+L +GPPG GKT A A +L F IS ++ ++ E+ ++ V ++ K+ A
Sbjct: 211 VLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLA 267
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQ 352
+L +GPPG GKT A A +
Sbjct: 529 VLLWGPPGCGKTLLAKAVANE 549
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.33
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 293 LFYGPPGTGKTSAILAAAKQ---LFGDISRDRVLELNASDERGIQVVRD 430
L +GPPGTGKT A A Q F ++ +++++ D G ++VRD
Sbjct: 223 LMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGD--GAKLVRD 269
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 29.5 bits (63), Expect = 0.43
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDKVKA 442
++ G G GKT+ A Q + +VLE+NASD+R V +KV +
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQ-----AGYKVLEINASDDRTAHTVHEKVSS 464
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQ 352
++ YGPPGTGKT A A +
Sbjct: 216 IMLYGPPGTGKTLCARAVANR 236
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAA 346
+L YGPPGTGKT A A
Sbjct: 182 ILLYGPPGTGKTLLARAVA 200
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Frame = +2
Query: 290 LLFYGPPGTGKT--SAILAAA 346
+LF+GPPGTGKT + LAAA
Sbjct: 303 VLFHGPPGTGKTLMARALAAA 323
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.1 bits (62), Expect = 0.57
Identities = 30/103 (29%), Positives = 48/103 (46%)
Frame = +2
Query: 233 KXEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERG 412
+ ++ Q LRE G +L +GPPGTGKT A A + SR ++AS
Sbjct: 481 RPDLFQGLREPARG-----MLLFGPPGTGKTMLARAVATE-----SRSVFFSISASSLTS 530
Query: 413 IQVVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTA 541
+ + A T++ K + PS ++ +DE DS+ +A
Sbjct: 531 KFLGESEKLVRALFTLAKKLS-----PS--IIFVDEIDSLLSA 566
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/20 (65%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
Frame = +2
Query: 290 LLFYGPPGTGKT--SAILAA 343
+LF+GPPGTGKT + +LAA
Sbjct: 409 VLFHGPPGTGKTLMARVLAA 428
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQL 355
+L YGPPGTGKT K L
Sbjct: 307 ILLYGPPGTGKTLIARQIGKML 328
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.00
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +2
Query: 8 QLKAIQQQVKKIVNFKIVKRKSLNTLIKCKHFLRLERYLQETKRQLLELKLQIRKNLQLH 187
QL++ +Q +K +I+ +S K K LE L E +++ EL+ Q +KN +
Sbjct: 1576 QLESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSEN 1635
Query: 188 GSKNID 205
NID
Sbjct: 1636 THDNID 1641
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Frame = +2
Query: 278 DLPHLLFYGPPGTGKTSAI--LAAAKQL----FGDISRDRVLELNASDE-RGIQVVRDKV 436
+LP+++ G PGTGKT+ +A +L GD+ ++ L ++ + V DKV
Sbjct: 7 ELPNIIICGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVDEDKV 66
Query: 437 KAFAQ--LTVSGKRADGRPCPSYKLVILD 517
+ + L G D C + ++D
Sbjct: 67 LDYLEPKLLKGGCIIDWHTCGLFSEELID 95
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQ 352
+L YGPPGTGK+ A A +
Sbjct: 165 ILLYGPPGTGKSYLAKAVATE 185
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 245 VQVLRECLSGGDLP--HLLFYGPPGTGKTSAILAAAKQLFGD 364
+++ R LS + P LF GP GTGKT A A +F D
Sbjct: 600 IRLSRAGLSDPNQPIASFLFCGPSGTGKTLLTKALASFMFDD 641
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 58 SEKEITKYSHKMQAFLKTGKISAGDKASTSGVKTTNKKKPPAP 186
S+K + S T + S ASTS VKT +KK AP
Sbjct: 423 SKKSLRNDSKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAP 465
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 293 LFYGPPGTGKTSAIL 337
L GPPGTGKT IL
Sbjct: 1290 LIQGPPGTGKTKTIL 1304
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 281 LPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDE 406
L +L G PG GKTS I A A++ + +++ +N SD+
Sbjct: 1559 LKPILLEGSPGVGKTSLITALARE-----TGHQLVRINLSDQ 1595
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 281 LPHLLFYGPPGTGKTSAILAAAKQLF 358
L LF GP G GKT+ A A+ LF
Sbjct: 532 LASFLFLGPTGVGKTALTKALAEFLF 557
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQLFGD 364
+L GPP TGKT+ + A+ L D
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSLGSD 92
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQ 352
++ YG PGTGKT A A Q
Sbjct: 228 VILYGAPGTGKTLLAKAVANQ 248
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 290 LLFYGPPGTGKTSAILAAAKQL 355
LL GP G GK++A+ AK+L
Sbjct: 108 LLICGPSGCGKSTAVQVLAKEL 129
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 8 QLKAIQQQVKKIVNFKIVKRKSLNTLIKCKHFLRLERYLQETKRQLLELKLQIRKNLQLH 187
++ +Q+Q+ + + V + I L L ++Q LELK KN ++
Sbjct: 664 KISVLQRQLTDVKDELDVSEEEREEAIVAGQKLSASFELMSNEKQALELKYSSLKNELIN 723
Query: 188 GSKNIDRRQ 214
+DRR+
Sbjct: 724 AQNLLDRRE 732
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 285 RIYYFMDRRVPVKRVPYLPLQSNS---SEISVETACWN*MHPMNVVYKS 422
++ F + +P K Y+PL+SN+ + +T W M+P VY S
Sbjct: 498 KVEEFANNSMPSKVGMYVPLESNTVYQHSPTYDTYGWQSMYPSYSVYPS 546
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 7 STQSNSTTGQKNCEFQNSEKEITKYSHKMQAFLKTGKISAGDKASTSGVK 156
S Q S TGQ N + + + +AF+ G+ S DK TS V+
Sbjct: 121 SDQQESHTGQANFPTDQEDPRNPQLDSQYEAFITQGE-SQTDKKKTSTVQ 169
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 55 NSEKEITKYSHKMQAFLKTGKISAGDKASTSGVKTTNKKKPPAPW 189
NS +I + +++ + G + G + TSG TTN KK A +
Sbjct: 496 NSNNDIDCFYKELKIGNEQGNNAPGYSSVTSGYGTTNSKKVVASY 540
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 284 PHLLFYGPPGTGKTSAILAAAKQLFGDISRDR 379
P L GPPGTGKT + L SR R
Sbjct: 408 PLSLIQGPPGTGKTVTSASVVYHLATMQSRKR 439
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +2
Query: 272 GGDLPH-LLFYGPPGTGKTSAILAAAKQL---FGDISRDRVLEL 391
G +P + GPPGTGKT A A + F +S LE+
Sbjct: 325 GAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEM 368
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.3
Identities = 4/21 (19%), Positives = 15/21 (71%)
Frame = -3
Query: 228 HYIVYCLRSIFFDPWSWRFFL 166
+Y+++C+ + +D W+++ +
Sbjct: 1442 NYVLFCIHHVLYDAWAFQLIM 1462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,286
Number of Sequences: 5004
Number of extensions: 48959
Number of successful extensions: 223
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -