Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_N07
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   1.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.8  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 136 ASTSGVKTTNKKKPPAPWVEKYRPKTIDDIVDQGRGCSSAKGMFIRWRST 285
           A TSG       +P +  V+KY+ +    I         AK  F RW ST
Sbjct: 410 ALTSGKCEHRPFEPKSTAVQKYQDQDYQPIYFVADSFEDAKEKFRRWVST 459


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 263 CLSGGDLPHLLFYGPPGTGK--TSAILAAAKQLFGDISRDRV 382
           C + GD+ H + Y P GT    T A + A K L   + + RV
Sbjct: 78  CGACGDIAHTVKYCPKGTKNPGTLATVNAFKLLRNSMGKRRV 119


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 28  TGQKNCEFQNSEKEITKYSHKMQAFLKTGKISAGDKASTSGVKTTNKKKPPA 183
           T  +NCE   SE  ITK  +     LK  +  +GD + T      N +  P+
Sbjct: 31  TDDENCETLQSEVHITKDEYDEIGRLK--RTCSGDISVTKCEGFCNSQVQPS 80


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 28  TGQKNCEFQNSEKEITKYSHKMQAFLKTGKISAGDKASTSGVKTTNKKKPPA 183
           T  +NCE   SE  ITK  +     LK  +  +GD + T      N +  P+
Sbjct: 31  TDDENCETLQSEVHITKDEYDEIGRLK--RTCSGDISVTKCEGFCNSQVQPS 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,583
Number of Sequences: 438
Number of extensions: 3374
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)