Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_N05
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 238 6e-64
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 237 8e-64
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 30 0.25
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.8
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.4
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.2
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 7.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.2
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.2
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 9.5
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 238 bits (582), Expect = 6e-64
Identities = 111/156 (71%), Positives = 129/156 (82%)
Frame = +1
Query: 91 PKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLV 270
PKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLV
Sbjct: 18 PKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLV 77
Query: 271 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 450
K GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MS
Sbjct: 78 KIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMS 137
Query: 451 VRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 558
VR+ D +A IEALRR ++KFPG + + K+ GF
Sbjct: 138 VRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173
Score = 50.0 bits (114), Expect = 3e-07
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 518 PERQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 637
P +Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 160 PGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 46.8 bits (106), Expect = 3e-06
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPE 95
M RRPARCYRYCKNKPYP+
Sbjct: 1 MARRPARCYRYCKNKPYPK 19
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 237 bits (581), Expect = 8e-64
Identities = 111/156 (71%), Positives = 129/156 (82%)
Frame = +1
Query: 91 PKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLV 270
PKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLV
Sbjct: 18 PKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLV 77
Query: 271 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 450
K GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MS
Sbjct: 78 KIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMS 137
Query: 451 VRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 558
VR+ D +A IEALRR ++KFPG + + K+ GF
Sbjct: 138 VRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173
Score = 50.0 bits (114), Expect = 3e-07
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 518 PERQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 637
P +Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 160 PGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 46.8 bits (106), Expect = 3e-06
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPE 95
M RRPARCYRYCKNKPYP+
Sbjct: 1 MARRPARCYRYCKNKPYPK 19
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 30.3 bits (65), Expect = 0.25
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -3
Query: 220 SAVHIRRTP---SARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISGYGLFLQYR*HLAG 50
S VH TP SAR ES ++ L+ P+ S P R G F Q HLA
Sbjct: 898 SKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQ 957
Query: 49 RRPMV 35
R M+
Sbjct: 958 RGNML 962
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 97 SRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 243
++FC V + KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 45 TKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 613 SEAALFTQLLKLITFILCETPLL*YVDLLTF 521
S+A F ++L FI C +P+L Y+ + F
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 293
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 121 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 240
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 613 SEAALFTQLLKLITFILCETPLL*YVDLLTF 521
S+A F ++L FI C +P+L Y+ + F
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 293
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 613 SEAALFTQLLKLITFILCETPLL*YVDLLTF 521
S+A F ++L FI C +P+L Y+ + F
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 265
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 613 SEAALFTQLLKLITFILCETPLL*YVDLLTF 521
S+A F ++L FI C +P+L Y+ + F
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 293
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 155 RERPLTTFHCACTWCPTNMNS 217
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 414 STLRLAKRTTHPSLEPISSS 355
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 142 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 285
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 240 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 124
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 88 IPKSRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 207
I S FC PDPK K A DD P + H+ S++
Sbjct: 81 ITDSFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 283 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 387
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 107 VGVYLIPRSVSSIWV 151
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 599 LHAASQTHHVHTL*NPTSLIRRSFDVPGNLN 507
+H + H +H+ + S +R FD P ++N
Sbjct: 374 IHDSGNFHPIHSSVDNNSFSQRDFDSPNSIN 404
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 510 QVPRNVKRSTYQRSGVSQSMNVMSLRSCVKR 602
+VP ++KR Y ++GVS+S + +KR
Sbjct: 89 KVPPHIKRPDYAKTGVSRSEQIEGRSFKLKR 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,390
Number of Sequences: 5004
Number of extensions: 65290
Number of successful extensions: 225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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