Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_N01
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    27   1.2  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   2.9  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   6.7  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.7  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.8  

>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 72  WPPRLEETIKRIQAHKGVMGVVIVNHEGIP--IKSSLDN 182
           +PP L + + ++ A KG+        EG P  I+S LDN
Sbjct: 187 FPPELFQEVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDN 225


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 296 RLLTRRNVNSFVESISRTTFXAFSVSCP 213
           RL+T   ++ F+ ++  +TF  F ++CP
Sbjct: 47  RLITVEKIDVFINAMVPSTFALFCMACP 74


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 96  IKRIQAHKGVMGVVIVNHEG 155
           I+RIQAH G +  + V H+G
Sbjct: 470 IERIQAHDGAIWDLAVGHDG 489


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 282 SSQKSKT*DTHCTGQRIHINCYTEHIGL 365
           SS+K+K  DT     +   + YT+HIGL
Sbjct: 245 SSEKTKYLDTIAQDYKGSADSYTDHIGL 272


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 312 HCTGQRIHINCYTEHIGLNLYLQKTV 389
           +C+   I+I C++E+  L   LQKT+
Sbjct: 460 NCSAGDIYILCFSENCWLYSVLQKTI 485


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 127 ITPLWAWILLIVSSSLGGHYV*ASKLKF 44
           I  LW+ +++I+SSSLG   +  + L F
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLF 493


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 334 ILIVIQNTSD*IFTYKKQXVNL*LKLFYIVFQNTIYYILEQFSS 465
           +L  +  + D +F Y    + L ++LFY + +      +E FSS
Sbjct: 441 VLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKVNCLYVEAFSS 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,894
Number of Sequences: 5004
Number of extensions: 41458
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)