Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_N01
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54216-5|CAA90946.1| 95|Caenorhabditis elegans Hypothetical pr... 61 5e-10
Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical pr... 29 2.0
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 3.4
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 3.4
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 3.4
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 3.4
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 3.4
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 3.4
AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical ... 28 4.5
AL022716-4|CAA18773.1| 703|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z54216-5|CAA90946.1| 95|Caenorhabditis elegans Hypothetical
protein T24H10.6 protein.
Length = 95
Score = 60.9 bits (141), Expect = 5e-10
Identities = 24/54 (44%), Positives = 43/54 (79%)
Frame = +1
Query: 199 YAGLIGQLTEKAXNVVREMDSTNELTFLRVRSRRHEILIAPDREFILIVIQNTS 360
+ + QL EK +RE+DS+N+LTFLR+R++++EI+IAPD++ +++VI++ S
Sbjct: 42 HTAFLQQLCEKTKTSIRELDSSNDLTFLRLRTKKNEIMIAPDKDHVIMVIKDLS 95
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/32 (46%), Positives = 26/32 (81%)
Frame = +3
Query: 87 EETIKRIQAHKGVMGVVIVNHEGIPIKSSLDN 182
EETI+R+Q+ KGV+G+++V+ G I S++D+
Sbjct: 5 EETIRRLQSEKGVVGIIVVDSAGRVIHSTIDS 36
>Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical
protein K01B6.3 protein.
Length = 410
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = -2
Query: 271 THLWSPFHEPHS----WPSQ*AVQ*AQHITAEVALSNELLIGIPS-WFTMTTPITPLWAW 107
+ LWS +P WP ++ + + AE + +P W T+ P TP WA
Sbjct: 24 SQLWSDLSDPKQMRFPWPINTPLEVYEQVGAERFDPSSHRYQMPFFWKTLAVPGTPSWAL 83
Query: 106 ILLIVSSS 83
++ I+ S+
Sbjct: 84 LVCIIEST 91
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 356 HRIKSLLTKNSXLIYN*NYFILFFRTLFIIY 448
+RI+ LL ++S + N F +FF TL+ I+
Sbjct: 183 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 213
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 356 HRIKSLLTKNSXLIYN*NYFILFFRTLFIIY 448
+RI+ LL ++S + N F +FF TL+ I+
Sbjct: 183 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 213
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 356 HRIKSLLTKNSXLIYN*NYFILFFRTLFIIY 448
+RI+ LL ++S + N F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 356 HRIKSLLTKNSXLIYN*NYFILFFRTLFIIY 448
+RI+ LL ++S + N F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 356 HRIKSLLTKNSXLIYN*NYFILFFRTLFIIY 448
+RI+ LL ++S + N F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 356 HRIKSLLTKNSXLIYN*NYFILFFRTLFIIY 448
+RI+ LL ++S + N F +FF TL+ I+
Sbjct: 213 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 243
>AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical
protein E01A2.6 protein.
Length = 218
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 86 RRNDQEDPSPQRGDGCRHRKPRRY 157
R ND +D QRGDGC + Y
Sbjct: 100 RSNDFDDDGDQRGDGCSSNYSKAY 123
>AL022716-4|CAA18773.1| 703|Caenorhabditis elegans Hypothetical
protein C24F3.4 protein.
Length = 703
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 203 LGLLDSLLRRPXMWFVKWT 259
+GL D + R WFVKWT
Sbjct: 119 MGLADDNVYRESRWFVKWT 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,102
Number of Sequences: 27780
Number of extensions: 224579
Number of successful extensions: 506
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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