Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_M24
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 210 1e-54
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 208 4e-54
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.009
05_02_0037 + 5883285-5884292 31 0.60
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 30 1.4
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 29 2.4
11_05_0040 - 18541774-18542193,18542221-18542514 28 7.4
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.8
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 210 bits (512), Expect = 1e-54
Identities = 103/199 (51%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Frame = +3
Query: 51 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 230
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 231 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 410
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 411 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHX 587
V +DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 588 YSQTKGXSRRGSLGSNATL 644
+ + + SRR + N T+
Sbjct: 181 HHKAR-PSRRATWKRNQTV 198
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 208 bits (507), Expect = 4e-54
Identities = 102/198 (51%), Positives = 127/198 (64%), Gaps = 1/198 (0%)
Frame = +3
Query: 54 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 233
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 234 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 413
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 414 AQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHXY 590
+DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286
Query: 591 SQTKGXSRRGSLGSNATL 644
+ + SRR + N T+
Sbjct: 287 HKAR-PSRRATWKRNQTV 303
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.009
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 438 FEVILVDPSHKAIRRDPK 491
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 491 DQLDRECCT*ASRDAWSDFGWSQLP 565
DQL + C A R WS W Q+P
Sbjct: 317 DQLALQACAQARRAPWSHLCWQQVP 341
Score = 25.0 bits (52), Expect(2) = 0.009
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 291 YGKPKSHGVNQLKPTRN 341
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 134 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 286
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 350 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 234
G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 486 PKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHXYSQTKGXSRRGSLGSNA 638
P+++ VH+ RG ++AG R G S G SRR LG A
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRRAWLGFKA 314
>11_05_0040 - 18541774-18542193,18542221-18542514
Length = 237
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 536 WSDFGWSQLPRSRQGTXILSNKGXLTPGQLGLKRNTL 646
W+D W+ P R+ ++ ++ L PG+L R+ L
Sbjct: 150 WNDLFWAVHPGGRKILDVVEDRLALAPGKLDASRHVL 186
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 257 WPQASSC*G-CHLWQAQEPWCQPVEAH 334
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,939,536
Number of Sequences: 37544
Number of extensions: 407160
Number of successful extensions: 1017
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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