Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_M23
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    29   0.35 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   1.1  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   4.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   7.6  
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    24   10.0 

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 161 PLNRRHKLPKQQKRREPQK*HRHLEISP*FAPRLLLAPGLFIRQ 292
           P+N  +  P + KRR+P +  R+  ++P   PR +  P  F+++
Sbjct: 36  PINVINHSPSETKRRDPVEELRYKPLTPPQDPRKVAPPNSFLKK 79


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 35  LSSTSNQXILIRNHEAEYITDSGG 106
           L++ +NQ  L  NHE E ++ SGG
Sbjct: 154 LNTQNNQSTLASNHEDENVSSSGG 177


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 189 FGSLCRRLSGICYLEPVPWEHWQP 118
           F  L  R + + YL+ V  +HWQP
Sbjct: 315 FNGLWARKNDLPYLKAVHGKHWQP 338


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 69  EIMRQSILLILAVCAFAAANVP 134
           +++R + LLI A+C  +  N+P
Sbjct: 371 QLLRDAFLLIRALCKLSIKNIP 392


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 282 NSPGARSSRGANYGLISRCLCHFCGSRRFCCFGSLCRRL 166
           N+P  R S    Y ++SRC  H          G+ C +L
Sbjct: 61  NAPPLRKSELEYYAMLSRCSVHHYSGNNI-DLGTACGKL 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,546
Number of Sequences: 5004
Number of extensions: 23505
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)