Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_M19
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   2.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   2.5  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   5.8  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    24   7.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   7.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    24   7.7  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 234 SIEYELPDCAKPPQGVKIEPLLMIHPSHFRRLESLRRVPF 353
           S+EYELP    P        L  I PS     + +++ PF
Sbjct: 274 SLEYELPKLLPPDIVPLFSHLFRIQPSDRSTTQQIKQFPF 313


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 198 PGYYSVPLHVDCSIEYEL 251
           P Y+ + L+ DCS++Y L
Sbjct: 697 PSYFDIRLYNDCSLKYSL 714


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 5  SHGPTSYSAHVCALLHSTIS 64
          +HGPT+++ H C ++   I+
Sbjct: 5  THGPTTWNPHSCTVVEKCIT 24


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 345 VPFVNXLPRGDAPPRGRHH 401
           +P V+ +P G+AP    HH
Sbjct: 14  IPLVSAMPLGNAPYHHHHH 32


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 301 MSRGSILTPCGGLAQSGSSY 242
           +SR S LT   GLA SG+SY
Sbjct: 321 ISRSSSLTDERGLADSGNSY 340


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 353  KGDAPQALEPPEVRRMNHEQRLNLDALRRLGTVGKLVFDTAV 228
            KG+  +AL PPEV +   +  LN   L +   +   + + A+
Sbjct: 995  KGEDEEALLPPEVVQRKVKGSLNKMTLEKFDKISDQILEIAM 1036


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,796
Number of Sequences: 5004
Number of extensions: 17474
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)