Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_M19
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...    28   2.4  
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861...    27   4.2  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    27   5.6  
08_02_0014 + 11255063-11255167,11256589-11256858,11257882-112582...    27   7.3  
03_06_0477 + 34210844-34211356                                         27   7.3  
12_01_0278 - 2016172-2016262,2017057-2017140,2017701-2017837,201...    26   9.7  
11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213...    26   9.7  

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 312 SHFRRLESLRRVPFVNXLPRGDAPPRGRHH 401
           +++  L   R V  V  L RG+ PPRG  H
Sbjct: 196 NYYEDLTPKRVVEIVEMLKRGETPPRGTQH 225


>07_03_0207 -
           15183894-15184685,15184993-15185078,15186042-15186144,
           15186890-15186971,15187112-15187203,15187295-15187383,
           15187467-15187547,15188610-15188724,15188894-15188935
          Length = 493

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 379 ASPRGXLFTKGTRRRLSSLRKCDG*IMSRGSILTPCGGLAQSGS 248
           A+P   +F KGTR R   L  C+G         + C G+ Q  S
Sbjct: 190 ANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYSACCGIPQVAS 233


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 264 KPPQGVKIEPLLMIHPSHFRRLESLRRV 347
           +PP+ V +E  +  H +H ++LES+ R+
Sbjct: 150 RPPRLVHLEKSITRHKAHIKKLESILRL 177


>08_02_0014 +
           11255063-11255167,11256589-11256858,11257882-11258285,
           11259011-11259242
          Length = 336

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 297 LMIHPSHFRRLESLRRVPFVNXLPRGD 377
           L++ PS+ RRL S  R+P +  LP  D
Sbjct: 49  LVLRPSNVRRLVSADRIPSLRILPLVD 75


>03_06_0477 + 34210844-34211356
          Length = 170

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -1

Query: 398 MAAAGGGISSRQXIYKGDA-PQ--ALEPP 321
           MAAAGGG S+   +++ DA P+  A EPP
Sbjct: 135 MAAAGGGSSADDWVWRCDARPEGIAAEPP 163


>12_01_0278 -
           2016172-2016262,2017057-2017140,2017701-2017837,
           2017961-2018230,2018306-2018430,2018515-2018646,
           2018744-2018821,2019177-2019220,2019803-2019981,
           2020168-2020428,2020528-2020655,2020749-2020853,
           2020932-2021073
          Length = 591

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 292 GSILTPCGGLAQSGSSYSILQSTCKGTE*YPGG 194
           G ++T  G L     +  ++ STCK +E Y GG
Sbjct: 185 GKLMTTSGVLIGESYNGYLMSSTCKFSEVYEGG 217


>11_01_0287 -
           2137425-2137581,2137981-2138117,2138246-2138515,
           2138591-2138716,2138790-2138932,2139032-2139117,
           2139574-2139752,2139941-2140210,2140282-2140380
          Length = 488

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -2

Query: 283 LTPCGGLAQSGSSYS----ILQSTCKGTE*YPGG 194
           L   GGL   GSS S    ++ STCK +E Y GG
Sbjct: 95  LMATGGLLIGGSSGSYNPKLMSSTCKFSEVYEGG 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,031,220
Number of Sequences: 37544
Number of extensions: 181580
Number of successful extensions: 534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)