Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_M19
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    32   0.18 
Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical pr...    30   0.71 
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    26   8.8  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    26   8.8  
U21733-1|AAB38384.1|  869|Caenorhabditis elegans UNC-44 protein.       26   8.8  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    26   8.8  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      26   8.8  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    26   8.8  
AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor o...    26   8.8  

>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 160  PLPTGRTSRFTSPQGITRCLYT*TAVSNTSFPTVP 264
            P+P  R+S+ TSP   +R + T T VS TS P  P
Sbjct: 1615 PVPPWRSSKSTSPAIASRLINTTTTVSGTSSPPPP 1649


>Z79756-1|CAB02120.2|  494|Caenorhabditis elegans Hypothetical
           protein F53C11.1 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 144 SSPQRTASDGTHVPLH*PPGYYSVPLHVDCSIEYELPD 257
           +SP  +     H PL+   G    P + DCS+E+E+PD
Sbjct: 24  NSPITSNVPSGHFPLN---GLAKFPANYDCSVEFEIPD 58


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 374  SSRQXIYKGDAPQALEPPEVRRMNHEQ--RLNLDALRRLG 261
            S  Q I +GD PQ  E  E+RR   E+   L ++A   LG
Sbjct: 6477 SEHQQITEGDVPQEEEETEMRRQETERIHSLAMEASSDLG 6516


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 374  SSRQXIYKGDAPQALEPPEVRRMNHEQ--RLNLDALRRLG 261
            S  Q I +GD PQ  E  E+RR   E+   L ++A   LG
Sbjct: 6477 SEHQQITEGDVPQEEEETEMRRQETERIHSLAMEASSDLG 6516


>U21733-1|AAB38384.1|  869|Caenorhabditis elegans UNC-44 protein.
          Length = 869

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 374 SSRQXIYKGDAPQALEPPEVRRMNHEQ--RLNLDALRRLG 261
           S  Q I +GD PQ  E  E+RR   E+   L ++A   LG
Sbjct: 352 SEHQQITEGDVPQEEEETEMRRQETERIHSLAMEASSDLG 391


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 252 PDCAKPPQGVKIEPLLMIHPSHFRRLESLRRVPFVNXLP 368
           P  ++PP   +    +    S+ RRL+++ R PF N  P
Sbjct: 115 PPQSRPPPVTRRPTFISTTTSNSRRLQTVTRRPFANRRP 153


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 317 VRRMNHEQRLNLDALRRLGTVGKLVF 240
           VRR   E+R  LDA  RL  +G LVF
Sbjct: 41  VRRNLLEKRQTLDARTRLDVLGSLVF 66


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 317 VRRMNHEQRLNLDALRRLGTVGKLVF 240
           VRR   E+R  LDA  RL  +G LVF
Sbjct: 41  VRRNLLEKRQTLDARTRLDVLGSLVF 66


>AC024201-12|AAL27266.1|  544|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform b protein.
          Length = 544

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 317 VRRMNHEQRLNLDALRRLGTVGKLVF 240
           VRR   E+R  LDA  RL  +G LVF
Sbjct: 41  VRRNLLEKRQTLDARTRLDVLGSLVF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,262,039
Number of Sequences: 27780
Number of extensions: 120612
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)