Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_M17
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   1.8  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.3  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   4.1  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   4.1  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   5.4  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   5.4  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.2  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.5  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    25   9.5  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   9.5  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 593 TASVLSPYDASRLSPCSLDAHLFSLSDSDILST*VKHV 480
           T SVL  ++ S  S C+L   LF     D+LS   K V
Sbjct: 58  TTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLAKRV 95


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 405 QPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSGQDV 509
           +PP   EDG   M  +P +  ++   V++S+  DV
Sbjct: 235 EPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDV 269


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 93 VLYQEKKRLYDFFETPAHNNVTTS 22
          VLY E K  +D+   P+ +++TTS
Sbjct: 13 VLYPEAKEFFDYPTIPSDSSITTS 36


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 505 SCPLELSTCPKTCRGWS 455
           +CPLEL+TC  T + W+
Sbjct: 169 TCPLELTTCAITFKFWT 185


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 595 SQHPFYHRTTRADCLLVHWMRIFSVYPTPTSC 500
           S +P    TT  + L ++W++  S + T +SC
Sbjct: 424 SHNPLASLTTDKNDLYINWLKSLSFFQTNSSC 455


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 527 FSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSVS 414
           + + +SDI S   KH+  D+S + W    + +   +++
Sbjct: 434 YPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIA 471


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 642 YFSLIITGGHERERSHH 592
           Y S ++ G HE +RSHH
Sbjct: 72  YTSELLVGDHELQRSHH 88


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = -3

Query: 602 GLITASVL--SPYDASR----LSPCSLDAHLFSLSDSDI 504
           G I +++L   PYD  R    +  C LD+ L S++D D+
Sbjct: 659 GTIRSNILFGEPYDEERYFQIIKACCLDSDLNSMNDGDL 697


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 602 GLITASVLSPYDASRLSPCSLDAHLFSLSDSDI 504
           G + A  +SP D ++LS    ++ LFSLS  ++
Sbjct: 16  GNMAAFDISPLDETKLSGSEKESFLFSLSRDNV 48


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 220 KKFITTQLAPVWRDFRGLVKVKMVPY 297
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,570
Number of Sequences: 5004
Number of extensions: 60150
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)