Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_M16
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...   222   4e-59
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   0.75 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.0  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.3  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   9.2  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  222 bits (542), Expect = 4e-59
 Identities = 102/153 (66%), Positives = 119/153 (77%)
 Frame = +2

Query: 179 K*LFRXFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATAS 358
           K +F+ FTGKQGTFH+Q A+DYGTKVVGG +PKKAGT HLGKPVFGT++EA   T A AS
Sbjct: 42  KVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADAS 101

Query: 359 VIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 538
            ++VPPP             +PLIV ITEG+PQHDM+RV   L  Q+KSRLVGPNCPGII
Sbjct: 102 AVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGII 161

Query: 539 APEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEA 637
            P +CKIGIMP+ +HK GCIG+VSRSGTLTYEA
Sbjct: 162 RPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEA 194



 Score = 31.9 bits (69), Expect = 0.080
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 76  LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFHWKAG 213
           L +F    +L N    S + Y +T  NL++ S+TKVI QGF  K G
Sbjct: 12  LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQG 53


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 556 FTLLRSNDTRTVRTNQSRLVLSQEGMFYSHHIMLWHTFCNAHNEGHFSLN 407
           +TLL  N T  +R +QS +     G  + H    W T  N  N  + S N
Sbjct: 186 YTLLLQNTTVVIRRDQSVVYTGDVGTNFFHSPTKWITHSNVSNGYYTSRN 235


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 345 PVPAFASLTVPNTGLPRCSVPAFFGDTPPTTLVP 244
           P+P++ + ++PN G+P  ++P      P T  +P
Sbjct: 124 PLPSYNTASLPNAGIP-AAMPGMPSGYPGTVPIP 156


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 22  PFRXFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 141
           PF    F N T  +PV  +S+  +G +   N   +   P+A
Sbjct: 33  PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 50  LQWLCQSGFFLSSKMD*NSAMYDLHPATLM 139
           L W   S F ++  MD +  +YD H   L+
Sbjct: 134 LCWSVDSNFLIAGAMDNSLRLYDAHTGQLL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,968
Number of Sequences: 5004
Number of extensions: 50415
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)