Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_M16
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 220 8e-58
AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical ... 210 5e-55
U37429-10|AAN63413.2| 100|Caenorhabditis elegans Hypothetical p... 29 2.8
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 28 6.5
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 27 8.6
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 27 8.6
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 27 8.6
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 220 bits (537), Expect = 8e-58
Identities = 102/153 (66%), Positives = 118/153 (77%)
Frame = +2
Query: 179 K*LFRXFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATAS 358
K + + FTGKQGTFH +Q L+Y TKVVGGV+ KAGTEHLG PVF V EA+ TGA AS
Sbjct: 35 KVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKTGADAS 94
Query: 359 VIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 538
VIYVP +PL+VCITEG+PQHDMVRVK LL+QNK+RLVGPNCPGII
Sbjct: 95 VIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGII 154
Query: 539 APEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEA 637
+ ++CKIGIMP +HKRGCIG+VSRSGTLTYEA
Sbjct: 155 SADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEA 187
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 136 YAETRKNLILTSETKVIVQGFHWKAG 213
Y T NL + +TKVIVQGF K G
Sbjct: 21 YNSTYNNLKINKDTKVIVQGFTGKQG 46
>AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical
protein F23H11.3 protein.
Length = 321
Score = 210 bits (514), Expect = 5e-55
Identities = 100/153 (65%), Positives = 116/153 (75%)
Frame = +2
Query: 179 K*LFRXFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATAS 358
K + + FTG+QGTFHS+Q L+Y T +VGGVSP KAG HLG PVFG+V EAK TGA A+
Sbjct: 36 KVIVQGFTGRQGTFHSKQMLEYNTNLVGGVSPNKAGQTHLGLPVFGSVAEAKDRTGADAT 95
Query: 359 VIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 538
VIYVP G + LIV ITEG+PQ DMVRVK+ LL+QNKSRL+GPNCPGII
Sbjct: 96 VIYVPAAGAARAIHEAMDAEIGLIVAITEGIPQQDMVRVKNRLLKQNKSRLLGPNCPGII 155
Query: 539 APEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEA 637
A CKIGIMP +HK+GCIG+VSRSGTLTYEA
Sbjct: 156 ASGDCKIGIMPGHIHKKGCIGIVSRSGTLTYEA 188
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 136 YAETRKNLILTSETKVIVQGFHWKAG 213
Y +TR NL++ TKVIVQGF + G
Sbjct: 22 YNDTRNNLMINKSTKVIVQGFTGRQG 47
>U37429-10|AAN63413.2| 100|Caenorhabditis elegans Hypothetical
protein F09E5.16 protein.
Length = 100
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 385 SSRGRYINNRGSCSCACLCLFD-CTKHRLTK 296
SSRG + R + S AC CL CT H +TK
Sbjct: 70 SSRGSVMRRRSAGSYACPCLHKVCTYHCMTK 100
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 424 PHCVHYRRCATT*YGASKTCPLETKQ 501
P C+H C TT K C L T Q
Sbjct: 133 PTCIHVNACTTTKCSPGKKCALHTVQ 158
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 446 GVPQHDMVRVKHALLRQN-KSRLVGPNCPG 532
G+ + DM+R KH LL QN +SRL P PG
Sbjct: 19 GMQELDMLRAKHTLLIQNLRSRL--PIIPG 46
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 198 KXLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIF 88
K L N C+ Q F F GC SYI + +F
Sbjct: 256 KRLLNFMCWRFPSQFFQSFFDYYGGCMSYILQLFPLF 292
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 198 KXLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIF 88
K L N C+ Q F F GC SYI + +F
Sbjct: 256 KRLLNFMCWRFPSQFFQSFFDYYGGCMSYILQLFPLF 292
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 198 KXLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIF 88
K L N C+ Q F F GC SYI + +F
Sbjct: 256 KRLLNFMCWRFPSQFFQSFFDYYGGCMSYILQLFPLF 292
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,972
Number of Sequences: 27780
Number of extensions: 310680
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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