Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_M15
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa... 59 3e-10
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 29 0.20
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 27 0.80
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 27 1.4
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 26 2.4
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 3.2
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 5.6
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 5.6
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 24 7.4
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 24 7.4
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 24 7.4
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 24 9.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 24 9.8
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 24 9.8
>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 58.8 bits (136), Expect = 3e-10
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 63 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 239
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 240 DRKGFTVVYKKAKATRKPAK 299
R + K +KPAK
Sbjct: 61 PRGVVLITKTNPKNAQKPAK 80
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.20
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 263 HYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 120
HYC S + LHDT LV G + S +++ + D L H
Sbjct: 252 HYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.5 bits (58), Expect = 0.80
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 102 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRKGFTVVYKKAK 278
NN ++L+KK+ K P+ V + NG+ K A V P RK + +
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGR 243
Query: 279 ATRKPAKNLS 308
+ NLS
Sbjct: 244 CNKAEDCNLS 253
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 1.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 42 PNTTCSQCVRRQK 4
PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 127 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 17
FFT ++L + S I Y Y HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 75 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 182
S ++ + + NNN ++V + +I+ P+S + LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 223 PTAFL*IKPLYLKEWRLVTLFGSLLN 146
PT+F IKPL + +R+ L+ LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 206 SQESRWCRGEP*QEGIHSSVQESKGY 283
S +S W +P + IHSSVQE++G+
Sbjct: 2 SNKSAW---QPQFDEIHSSVQEAEGF 24
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 276 LLSCTLL*IPSCQGSP 229
LL C+++ I SCQG P
Sbjct: 542 LLICSIIDISSCQGDP 557
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 132 NIKKPFSKEPNNVTNLHSFRYNGLI 206
N+KK ++ N+T HS+ NG I
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTI 347
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 24.2 bits (50), Expect = 7.4
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 192 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP-AKN--LSAVHSRLVPGGHCTSEEVV 362
Y GL +V V P F VY+ AKA +KP +N +SA + +V G EVV
Sbjct: 51 YRGL---SSVLVSTLPSASSFFFVYEYAKARQKPGVRNHLVSASVAEVVSCGILAPAEVV 107
Query: 363 K 365
+
Sbjct: 108 R 108
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 274 QRLPESPLKTYPPSIQGWCQEV 339
Q + + LK YPP +Q W + +
Sbjct: 442 QLVEQFTLKFYPPQVQYWARAI 463
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 23 CEHVVFGVEIGLNRKNVVVTELDDHPQQQCI 115
C+HV+ V+ ++R + +VT D +C+
Sbjct: 95 CDHVLSTVDKAISRVHAIVTCTQDRMIIECV 125
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 159 PNNVTNLHSFRYNGL 203
P V+NLH + YN L
Sbjct: 186 PQTVSNLHGYTYNAL 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,824
Number of Sequences: 5004
Number of extensions: 29202
Number of successful extensions: 87
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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