Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_M14
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    26   2.0  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   2.6  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   3.5  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    24   8.0  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 7   LFAAGREKLSSMPVGG 54
           L AAG EKL+++P GG
Sbjct: 54  LIAAGNEKLATVPTGG 69


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 182 TKLYKSTRRWSLFQFMF 232
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 7   LFAAGREKLSSMPVGG 54
           L AAG EKL+++P GG
Sbjct: 54  LIAAGNEKLATVPSGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 7   LFAAGREKLSSMPVGG 54
           L AAG EKLS++P  G
Sbjct: 54  LIAAGNEKLSTVPSAG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,046
Number of Sequences: 5004
Number of extensions: 5262
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)