Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_M12
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 181 3e-46
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 30 0.76
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 30 0.76
U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.3
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 4.0
U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical p... 28 4.0
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 4.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 4.0
AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical... 28 4.0
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 27 5.3
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 27 5.3
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 27 5.3
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 27 5.3
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 181 bits (440), Expect = 3e-46
Identities = 78/118 (66%), Positives = 104/118 (88%)
Frame = +2
Query: 50 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 229
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXQYDRSLLVAXP 403
DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I YD+SLLVA P
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADP 122
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 30.3 bits (65), Expect = 0.76
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -3
Query: 265 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 86
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 85 G 83
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 30.3 bits (65), Expect = 0.76
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -3
Query: 265 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 86
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 85 G 83
G
Sbjct: 208 G 208
>U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical
protein C42D4.2 protein.
Length = 500
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 254 GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXQYDRSLLVAXPXPCKPKNS 427
GG VA + + ++ L + +Q+Y+ +S + Q +R+ A C PKNS
Sbjct: 129 GGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTYRFAEHANCLPKNS 185
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 326 YVDEASKKEIKDILXQYDRSL 388
+ DE +KE+ D+ QYDRS+
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSI 171
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 259 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 161
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical
protein K11G12.6a protein.
Length = 503
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 199 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 318
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 438
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 199 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 318
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 701
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 259 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 161
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical
protein Y37A1B.9 protein.
Length = 520
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 205 RQGKILYG*HQSDSQ---GWWSCSTSLRYQTSYFKGSDRLLPEIC 330
R+ +I+ H + GW S L Y+T+Y + L P+ C
Sbjct: 259 RENEIIINIHDNPEMTRLGWTSLEYKLGYRTTYIMNLENLHPDFC 303
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 27.5 bits (58), Expect = 5.3
Identities = 29/107 (27%), Positives = 52/107 (48%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXQ 373
++ G +++ IR AI +AF+Q YV E K+ I+ +
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 27.5 bits (58), Expect = 5.3
Identities = 29/107 (27%), Positives = 52/107 (48%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXQ 373
++ G +++ IR AI +AF+Q YV E K+ I+ +
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 27.5 bits (58), Expect = 5.3
Identities = 29/107 (27%), Positives = 52/107 (48%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXQ 373
++ G +++ IR AI +AF+Q YV E K+ I+ +
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 27.5 bits (58), Expect = 5.3
Identities = 29/107 (27%), Positives = 52/107 (48%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILXQ 373
++ G +++ IR AI +AF+Q YV E K+ I+ +
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
F16D3.4 protein.
Length = 1232
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 122 MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGG 259
++ + P+D + R + ++L+ P+L LG E + + + + V GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,662,630
Number of Sequences: 27780
Number of extensions: 234855
Number of successful extensions: 610
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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