Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_M08
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 149 4e-37
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 146 2e-36
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 138 7e-34
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 31 0.12
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 0.84
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 1.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.0
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 6.0
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 149 bits (360), Expect = 4e-37
Identities = 73/155 (47%), Positives = 93/155 (60%)
Frame = -1
Query: 572 FFRXKLKLMSFLRKRCNVNPARGPFHFRXPXKIXWKTVRGMIPHKTERGKNAXRRLRTYD 393
FFR KLK +++LRK C NP+RG FHFR P +I K VRGM+PHKT RG+ A L+ +
Sbjct: 48 FFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVE 107
Query: 392 GCPPPFDNXXXXXXXXXXXVFCXKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVK 213
G PPPFD V KPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 108 GIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA- 166
Query: 212 RVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 108
Y+ KL + K A +K +P + +GY
Sbjct: 167 -AFYQAKLAKQKKIAS---AKEASPVNQKLSQFGY 197
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 146 bits (354), Expect = 2e-36
Identities = 70/142 (49%), Positives = 88/142 (61%)
Frame = -1
Query: 572 FFRXKLKLMSFLRKRCNVNPARGPFHFRXPXKIXWKTVRGMIPHKTERGKNAXRRLRTYD 393
FFR KLK +++LRK C NP+RG FHFR P +I K VRGM+PHKT RG+ A L+ +
Sbjct: 48 FFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVE 107
Query: 392 GCPPPFDNXXXXXXXXXXXVFCXKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVK 213
G PPPFD V KPGR YC VGRLS E+GWKY D+V KLE++RK K+
Sbjct: 108 GIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA- 166
Query: 212 RVAYEKKLKRITKDAGEKVSKA 147
Y+ KL + K A K + +
Sbjct: 167 -AFYQAKLAKQKKIASAKAASS 187
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 138 bits (333), Expect = 7e-34
Identities = 61/118 (51%), Positives = 78/118 (66%)
Frame = -1
Query: 572 FFRXKLKLMSFLRKRCNVNPARGPFHFRXPXKIXWKTVRGMIPHKTERGKNAXRRLRTYD 393
FFR KLK +++LRK C NP+RG FHFR P +I K VRGM+PHKT RG A + L+ +
Sbjct: 48 FFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALE 107
Query: 392 GCPPPFDNXXXXXXXXXXXVFCXKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 219
G PPPFD V KP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 108 GIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 230 KGKAVKRVAYEKKLKRITKDAGEKVSKATTP 138
KGK V R+ Y+ K + D+GE+++K P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.84
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 293 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 159
R S E K D K E+KR+ K K+ EKK K+ K+ +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 251 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFT 132
R + KR+ K +R+AYE+ LKR K EK +K++ T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 239 DKRKGKAVKRVAYEKKLKRITKDAGE-KVSKATTPFTTIIQSYG 111
DKR+ + + YEK+L+ + K+ E + P ++I+ YG
Sbjct: 18 DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 120 LDDGSEWCCRLRHLLTSILGDPLKFLFIGNSLNSL 224
L D E R+RH S++G+P+ + +I ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,844
Number of Sequences: 5004
Number of extensions: 37515
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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