Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_L19
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    91   2e-19
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    50   3e-07
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    29   0.44 
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    26   5.4  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   7.2  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 47/112 (41%), Positives = 62/112 (55%)
 Frame = +3

Query: 312 GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 491
           GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +K    A 
Sbjct: 11  GRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGAR 70

Query: 492 TRLVRKAWTDAKLNEKWTESQWAXKLANKEKRAQMTDYDRFKLTAARVKRNR 647
           + +V K W    +  KW  S WA KL  K+ R+Q+ D+DRF     R+K+ R
Sbjct: 71  SGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRF--AVMRLKKQR 120


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +2

Query: 86  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 205
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 605 VICHLCALFFVR*LXGPLTFCPFFIEFSICPRF 507
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMR--GRPVGFCPLQLDFNNWPKF 538


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 312 GRVALVADGPLKGKLVSVVDVIDQ 383
           G+VAL+  G   GK V ++  IDQ
Sbjct: 8   GKVALITRGRFAGKKVVILQAIDQ 31


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 394 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLLVS 501
           ++ D AV Y  N+    NS++ ++A N  S PL+ +
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLIAN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,750
Number of Sequences: 5004
Number of extensions: 55046
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)