Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_L11
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.4  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   4.2  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    24   9.6  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    24   9.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    24   9.6  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +3

Query: 192 MFTNVYNTGLLITLTNYIGAGSHSFDRTTSFDSIDLEELSEPTTTLQPAQQSSES 356
           ++ +VY TG  +  T      S S   TTS  S      S  TTT  P+  SS S
Sbjct: 111 LYWSVYLTGNGVLQTT---VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSS 162


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 111 RRLLVWAKNAVTAFH*GLVASSLGYLTMFTNVYNTGLLITLTNY 242
           RR+L W++ A   FH   +   LG+   +   Y  G ++ + +Y
Sbjct: 624 RRVLRWSQEACDTFHYAGIYPFLGWFFNYLPYYIMGRVLYVHHY 667


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 201 NVYNTGLLITLTNYIGAGSHSFDRTTSFDSID 296
           N+Y+ GL      +IGA +   D  T + SID
Sbjct: 2   NIYSVGLFYFFLVFIGAQAMDLD-ITDYQSID 32


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 86  KPIPYNTLSSTSSLGKKCC 142
           +P  Y T+S+   LGKK C
Sbjct: 672 RPDSYQTVSALKQLGKKVC 690


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 171 SSLGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTTSFDSIDLE-ELSEPTTTLQP 335
           S+L Y   F+N      LIT+TN    G++S    +S   I     +S+P+ T  P
Sbjct: 56  STLPYTHSFSNASVYTTLITITNSQCTGNYSTLTISSQPLIHTNTSISKPSQTATP 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,927
Number of Sequences: 5004
Number of extensions: 33640
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)