Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_L11
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432...    30   0.77 
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280...    28   3.1  
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    27   5.4  
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621...    27   7.2  
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24...    27   9.5  
03_06_0078 + 31505126-31507933                                         27   9.5  

>09_03_0042 +
           11842263-11842698,11842799-11842896,11843082-11843217,
           11843349-11843509,11843603-11843753,11843855-11843952,
           11844142-11844277,11844404-11844532,11844622-11844720,
           11844814-11844909,11845002-11845100,11845201-11845296,
           11846394-11846628,11846752-11846873,11846993-11847114,
           11847275-11847345,11847940-11848027,11848374-11848439,
           11848676-11848795
          Length = 852

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
 Frame = +3

Query: 162 LVASSLGYLTMFTNVYNTGLLITLTNYIGAGSH-SFD-----RTTSFDSIDLEELSEPTT 323
           L AS L  L + T      +  TL + +   +H ++D     R T+FDS++L+ +  PT+
Sbjct: 616 LRASVLACLNLETLQPRNSICTTLQSELSGSAHPTYDHQTVMRPTTFDSLELDMVDTPTS 675

Query: 324 TLQPAQQSSE 353
            +  A++ S+
Sbjct: 676 DVSNAKEQSQ 685


>06_01_0390 +
           2802334-2802339,2802461-2802618,2802755-2802826,
           2802967-2803114,2803234-2803503,2803741-2803904,
           2804184-2804236,2804302-2804496,2804597-2804694,
           2804787-2804891
          Length = 422

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 195 FTNVYNTGLLITLT-NYIGAGSHSFDRTTSFDSIDL 299
           F N  N+ L I LT NYI A S S   T +FD ID+
Sbjct: 85  FANENNSFLAIKLTVNYIIAASSSNIYTKTFDGIDV 120


>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 67  KFCQNDQTDSLQHVIVDF*FGQKMLLLL 150
           K CQ  Q D LQ+++++   G+K LL+L
Sbjct: 222 KPCQMTQMDQLQYMLIEQVVGRKFLLVL 249


>04_04_1032 -
           30259180-30260519,30260650-30260720,30261099-30262118,
           30263886-30264121
          Length = 888

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 258 HSFDRTTSFDSIDLEELSEPTTTLQPAQQ 344
           HSF R      + +EE ++P TT+  AQQ
Sbjct: 311 HSFQRDDDSGPVLIEEGNDPLTTIYQAQQ 339


>11_01_0031 +
           248264-248513,248519-249007,249178-249445,249631-249718
          Length = 364

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 159 GLVASSLGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRT-TSF 284
           G     LG     TN+  T +LIT+T Y    S+ F  + TSF
Sbjct: 57  GEAGCCLGLADPVTNIILTTILITITTYSRKKSYGFSMSHTSF 99


>03_06_0078 + 31505126-31507933
          Length = 935

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 96  PTTRYRRLLVWAKNAVTAFH*GLVASSLGYLTMFTNVY 209
           PT+  RR    +KN +      +V +SLG+LT F +VY
Sbjct: 871 PTSNGRREKKSSKNDIIGIE--VVTASLGFLTNFEDVY 906


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,584
Number of Sequences: 37544
Number of extensions: 239968
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)