Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_L07
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 31 0.15
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 30 0.34
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 28 1.4
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 27 2.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.5
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 9.5
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 417 ATQFSDSAFIAVGVPIIPFNS-ISLYVSSNARLSPLTVGATVSAPP 283
+T F+ + F +V +P +S + Y+ N+ L+P +GA V PP
Sbjct: 197 STNFASTTFPSVPFHPLPVDSGLQKYIDRNSNLTPPALGAGVPGPP 242
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 29.9 bits (64), Expect = 0.34
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = -3
Query: 546 NTLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPII 367
N+ C E SWSR LSN + SL +S + FSD + GVP
Sbjct: 101 NSACDRYYQEALRKKSWSRSLSN-NISLSQSSSS-------PATSSFSDPKAFSAGVPKF 152
Query: 366 PFNSISLYVSSNARLS---PLTVGATVSAPPPVFTKTLGSSSAAPRCDDP 226
++ S VSS L+ ++ + PPPV+ T+ SS+ P
Sbjct: 153 TSDTSST-VSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTP 201
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.0
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = -3
Query: 534 SLSSCERSSNISWSRCLSNASSSLIRS---IKGCMSFAIVALATQFSDSAFIAVGVPIIP 364
S+SS SS+ S + SS +I S I G S +++T S+ +IP
Sbjct: 613 SISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIP 672
Query: 363 FNSISLYVSSNARLSPLTVGATVSAPPPVFTKTLGSSSAA 244
+S + SS+ +S V ++ S+P P + + + SA+
Sbjct: 673 SSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 465 GSLRRCLSNVTRKCWNCARSWTNCRACSRT 554
G +RRC + + K +R + CR C RT
Sbjct: 475 GGIRRCANLLCNKWEEHSRQFAKCRRCRRT 504
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = -3
Query: 483 SNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIPFN-SISLYVSSNAR-LSPLT 310
S +S+ ++ C + + LA+ DS + P + S+S SS + L+P
Sbjct: 45 STKASTSTPFVENCSNL-LCDLASIVEDSPPTLTNTSLSPHSFSLSDMESSMSNWLNPFA 103
Query: 309 VGATVSAPPPVFTKT-LGSSSAAPRCDDP 226
T+++ PP+FT T +GS ++ +P
Sbjct: 104 FDNTMNSAPPLFTSTNMGSPNSLENSTNP 132
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.4
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = -3
Query: 483 SNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIPFNSISLYVSSNARLSPLTVG 304
++ SSS SI S A A +T S S+ I + +S + +SS++ SPL+
Sbjct: 12 TSLSSSASSSIPASSSSA--AASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSS 69
Query: 303 ATVSAPPPVFTKTLGSSSA 247
+ S F +L SSS+
Sbjct: 70 SFTSPASSSFITSLVSSSS 88
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -2
Query: 475 LKLPDPFD*GLHVIRHRCIGNAILRLRIHSCRSPHYTI*LDLSIR 341
LK PD + LH R + I N L C P Y + L IR
Sbjct: 950 LKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLEIR 994
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 597 ALCFXGPLDXRAYCWYGNTLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVA 421
A C D ++Y YGN LC + I+ S L+ ++ SI GC + A+VA
Sbjct: 965 AQCGSAWYDSQSYICYGNILCPI--------INGSPLLACGNACYDSSIYGCSNGALVA 1015
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.5
Identities = 28/95 (29%), Positives = 43/95 (45%)
Frame = -3
Query: 534 SLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIPFNS 355
S SS SS+ S S S++SSS S S + + ++ S S+ + VPI S
Sbjct: 156 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTS 215
Query: 354 ISLYVSSNARLSPLTVGATVSAPPPVFTKTLGSSS 250
S SS++ S + S+ F T+ SS+
Sbjct: 216 SSHSSSSSSSSSSSSSSRPSSSSS--FITTMSSST 248
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.2
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -3
Query: 543 TLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIP 364
T C+ S SSN SR S + + + + I++L+ F V + P
Sbjct: 238 TACNRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRVFHKPEVHLDP 297
Query: 363 FNSISLYVSSNARLSPLTVG 304
SI L +SS+ S LT G
Sbjct: 298 SASI-LNLSSSHGESNLTNG 316
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 576 LDXRAYCWYGNTLCSLSSCERSSNISWSRCLSNASSSLIRS 454
L+ +Y WY +T S+ SS + WS +S+ + S
Sbjct: 3854 LNSNSYKWYNSTTQSVYYNATSSTVPWSNSTFRNTSNTMTS 3894
Score = 25.0 bits (52), Expect = 9.5
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = -3
Query: 579 PLDXRAYCWYGNTLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSD 400
P D + NT +S + +S + + SSS++ S S +I+ +T +
Sbjct: 351 PTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITS 410
Query: 399 SAFIAVGVPIIP---FNSISLYVSSNARLS--PLTVGATVSAPPPVFTKTLGSSS 250
S+ + PI NS + SS S P+T ++ P+ + ++ +SS
Sbjct: 411 SSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSS 465
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 564 AYCWYGNTLCSLSSCERSSNIS--WSRCLSNASS------SLIRSIKGCMSFAIVALATQ 409
A W+G +CSL+ +NIS S C+ SS S++ + + I +
Sbjct: 125 ALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCAFVPLIFIRIPVIVAM 184
Query: 408 FSDSAFIAVGV 376
++ + F A+GV
Sbjct: 185 YAWTLFAAMGV 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,413
Number of Sequences: 5004
Number of extensions: 42594
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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