Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_L03
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    45   5e-06
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.26 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    29   0.34 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   1.8  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   5.5  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.5  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    24   7.3  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    24   7.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    24   7.3  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    24   9.7  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 44.8 bits (101), Expect = 5e-06
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = +3

Query: 30  LGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 146
           +GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 132 IGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 187 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 74
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 166 NSIIPNWRLXYFCFFIYLSIMSASWQELASLI 261
           N++   WR+  F FF+Y+ I S  W    S I
Sbjct: 251 NAVANGWRISPFRFFLYVFIASFIWNWFPSYI 282


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 102 VFAYHQSLYIPSWQPC-HHN 46
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 169 SIIPNWRLXYFCFFIYLSIMSASWQELASL 258
           +++PNW++ Y  F  YL+    + +E A++
Sbjct: 200 NLLPNWKIGYGRFSFYLNSSPFNVKEHAAI 229


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 104 WYLRTIKVSIFHHGNHAITIHRLPK 30
           WY++T K+SI    N+  + +R P+
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQ 36


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 215 IYQSCPHPGRNWLLSSQG*TILYLKKYTAYNNK 313
           IY +CP   +NW   SQG     L+KY    NK
Sbjct: 516 IYFTCPP--KNWGDVSQGIIYHQLRKYLLQTNK 546


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 166 NSIIPNWRLXYFCFFIYLSIMSASWQELASL 258
           + I P+  + +F  ++YL  + +SWQ +  L
Sbjct: 527 SKITPDGLVAFFPSYLYLESIVSSWQSMGIL 557


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 140 EILNVR*EITQ*FQTGALXTFVFLFIYQSCPHPGRNW 250
           + L++  +I    +  A   + FL +   C H G NW
Sbjct: 92  QTLDLEWQIASMHKEAAACVYEFLCVESVCLHTGENW 128


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 288 FKYKIVQPCDERSQFLPGCGHD**INKKTKV--XKAPV 181
           F+ +  Q  DE  ++ P C +   I+  TKV   KAP+
Sbjct: 52  FRIQFDQTMDESDEYCPNCDNHFVIDAITKVEKPKAPI 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,874
Number of Sequences: 5004
Number of extensions: 22313
Number of successful extensions: 64
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)