Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_L01
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-3|AAT92072.1|  394|Caenorhabditis elegans Aldehyde dehy...    29   3.8  
AF016672-2|AAO38633.1|  512|Caenorhabditis elegans Aldehyde dehy...    29   3.8  
AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde dehy...    29   3.8  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AF016672-3|AAT92072.1|  394|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform c protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 545 NEPVLGYRAGSRERXD 592
           NEP+L YR GS+ER D
Sbjct: 34  NEPILEYRKGSKERQD 49


>AF016672-2|AAO38633.1|  512|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform b protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 545 NEPVLGYRAGSRERXD 592
           NEP+L YR GS+ER D
Sbjct: 34  NEPILEYRKGSKERQD 49


>AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform a protein.
          Length = 563

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 545 NEPVLGYRAGSRERXD 592
           NEP+L YR GS+ER D
Sbjct: 34  NEPILEYRKGSKERQD 49


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 189  FVENFNAATPFS-RNKKEYEIVKVTALFESN-KFFDCRGRTR 308
            F+ENF   TPFS R +   E  K TA ++ N KF    GR R
Sbjct: 1038 FMENFEGDTPFSQRAECPIEEKKQTAKYDENDKFMFPLGRLR 1079


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,727
Number of Sequences: 27780
Number of extensions: 262842
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)