Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_K22
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    40   4e-04
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    33   0.043
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.8  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   5.0  

>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
 Frame = +1

Query: 184 CPLLLRVFCSTGRHNSPGDYVRGNVPQNELQIYTWMDATLRELTGLVKEV----NPETRR 351
           CP L+ V+      N   D     +P   +Q+Y W+  TL EL  L+ +     N ETR 
Sbjct: 23  CPFLISVYHQFQTKNHVLDIFEDVIPS--IQVYGWLTMTLYELGVLIADQLLLNNEETRH 80

Query: 352 KGTYFDFAIVYPDMRSPTYRMREIGVTC-SGQRGGDDNKTLSQLKFQIGNYLDISI 516
                    ++ D        R++G  C    +    NK L +   + G+ +D++I
Sbjct: 81  SEWSLQIRTIFYDKYKDRPIARDLGTVCLHNPKLFQGNKLLKRTGIKCGDKIDVTI 136


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 392 ISGYTMAKSKYVPFRLVSGLTSFTSPVSS 306
           +SGYT   S +VP+ L+S   SFT+  SS
Sbjct: 92  MSGYTFGSSNFVPYNLLSNTPSFTTSHSS 120


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 385 PDMRSPTYRMRE--IGVTCSGQRGGDDNKTLSQLKFQIGNYLD 507
           P +   TY + +  +G  C      D+NK LSQ  +++ +YL+
Sbjct: 59  PTLNMSTYSIEDSPMGFECLKYNLSDNNKLLSQNNYRLPDYLE 101


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -3

Query: 103 YLDNCGPTNFSNLSNYLR-----YASL*IPIKLPT 14
           +L  CG TNF   SN LR     Y+++ IP  LP+
Sbjct: 564 WLCECGFTNFRRRSNCLRCNAPHYSNMQIPASLPS 598


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 253 NVPQNELQIYTWMDATLRELTGLVKEV 333
           NVPQN  + Y  +D T R    ++KE+
Sbjct: 30  NVPQNIRRCYQLLDMTSRSFAVVIKEL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,571
Number of Sequences: 5004
Number of extensions: 56536
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)