Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_K22
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-4|CAA86742.1|  166|Caenorhabditis elegans Hypothetical pr...   159   1e-39
U12964-6|AAM29681.1|  329|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81098-5|CAB97235.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   8.1  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   8.1  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   8.1  
AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z46787-4|CAA86742.1|  166|Caenorhabditis elegans Hypothetical
           protein C16C10.4 protein.
          Length = 166

 Score =  159 bits (387), Expect = 1e-39
 Identities = 71/124 (57%), Positives = 96/124 (77%), Gaps = 3/124 (2%)
 Frame = +1

Query: 157 EKPVDREKTCPLLLRVFCSTGRHNSPGDYVR---GNVPQNELQIYTWMDATLRELTGLVK 327
           +KP+DREK CP+LLRVF +  RHN   +Y     G+VP +ELQ++TWMD +LRELT L+K
Sbjct: 15  DKPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIK 74

Query: 328 EVNPETRRKGTYFDFAIVYPDMRSPTYRMREIGVTCSGQRGGDDNKTLSQLKFQIGNYLD 507
           EVNP+ RRKGT FDFAIV  D  SP Y +R++G T +G+RG DDNKTL Q KF++G+++D
Sbjct: 75  EVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTNGERGIDDNKTLQQCKFEVGDFVD 134

Query: 508 ISIT 519
           ++I+
Sbjct: 135 VAIS 138


>U12964-6|AAM29681.1|  329|Caenorhabditis elegans Hypothetical
           protein F26F4.8 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 432 CNSYFPHTICRRTHIRIHNGKIKVCAFPSRL 340
           C+ +F      R HI++HN K+  C F  ++
Sbjct: 56  CDRFFTSERSLRCHIKVHNDKLLECYFCDKM 86


>Z81098-5|CAB97235.1|  330|Caenorhabditis elegans Hypothetical
           protein K07A12.7 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 253 NVPQNELQI-YTWMDATLRELTGLVKEVNPETRRKGTYFDFAI 378
           ++ +N L++   W+ A +R  + LV ++  ET++K T+    I
Sbjct: 142 SLDENSLEMKIAWLTALIRHWSLLVNDIGQETKKKPTWLTHRI 184


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 209 VQLADIILLETMLEETYLRMNYKYIHGWML 298
           V L  ++L+  +L   Y    YK IHGW++
Sbjct: 107 VMLCVVVLMTVLLIVFYKYKFYKLIHGWLI 136


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 209 VQLADIILLETMLEETYLRMNYKYIHGWML 298
           V L  ++L+  +L   Y    YK IHGW++
Sbjct: 107 VMLCVVVLMTVLLIVFYKYKFYKLIHGWLI 136


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 209 VQLADIILLETMLEETYLRMNYKYIHGWML 298
           V L  ++L+  +L   Y    YK IHGW++
Sbjct: 107 VMLCVVVLMTVLLIVFYKYKFYKLIHGWLI 136


>AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical
           protein F48A11.4 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 260 LRMNYKYIHGWMLHCENLQDL*KKLILRRDG 352
           ++ NY  +HGW+LH    QD+ + LI R +G
Sbjct: 146 VQANYPTVHGWLLHM--YQDV-ESLIFRGNG 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,227
Number of Sequences: 27780
Number of extensions: 321829
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)