Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_K19
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    28   2.6  
AC006684-8|AAF39963.2|  132|Caenorhabditis elegans Hypothetical ...    27   3.5  
Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine rece...    26   8.1  

>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 165 TLKIYVYFSLTHLFENKFY 109
           T   YV+ S+T LFEN+FY
Sbjct: 106 TFLAYVHVSITALFENRFY 124


>AC006684-8|AAF39963.2|  132|Caenorhabditis elegans Hypothetical
           protein T02H6.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 93  YFSCFYRIYFQINALVKNIHRFLT 164
           Y+ C  RI+++I+AL+ N   F+T
Sbjct: 21  YYPCSARIFWKIHALINNTDGFVT 44


>Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical
           protein F55H2.7 protein.
          Length = 379

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 189 IVLLFKIKIKRREAPIKLSQRKSSE 263
           IVL  +++ +R+EA +K +QRKS E
Sbjct: 293 IVLNARLRAERQEAALKRNQRKSRE 317


>U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine
           receptor, class w protein112 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 108 YRIYFQINALVKNIHRFLTYVAMQIFMIVLLFKIKIKRREAPIKLSQRKSS 260
           Y I+F +  +   +   L Y    +F+I+ + K  I R++     S ++ S
Sbjct: 219 YNIFFYLEGVTSKLIPCLLYPIATVFLIIEIRKAAINRKKISSSSSSQQDS 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,290,947
Number of Sequences: 27780
Number of extensions: 102789
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)