Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_K19
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.6  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 40  CCC*FTKFYLPNYLISN 90
           C   + KF++  Y+ISN
Sbjct: 120 CVIDYVKFHITQYMISN 136


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 230 SFSPFNFYFKQ*YNHEDLHCHIR 162
           S  P N Y  Q  NH   H H+R
Sbjct: 108 SNDPKNQYKNQNNNHYTSHQHLR 130


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 330 YTSIYYSEFNTVLYRGNALLRNIQKTSFG 244
           YT +  S  +  +  G   + NIQKT+ G
Sbjct: 723 YTDLKLSNPDISVEDGTLSINNIQKTNEG 751


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,268
Number of Sequences: 438
Number of extensions: 1268
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)