Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_K14
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    63   1e-11
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   0.39 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.69 
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.2  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   3.7  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    24   6.4  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 62.9 bits (146), Expect = 1e-11
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = +3

Query: 105 PIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 194
           PIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 22  PIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 0.39
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 206 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 114
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 176  SPVTPLSVISNSVSCAHPYPLRNGS 102
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 126 SLPTEEWVCFVSAFWPICALIINVLWADILNN 31
           S PT + +  ++A +  C LI +++W D L N
Sbjct: 41  SYPTNKVLSELAALFESCNLIFDLIWFDDLQN 72


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 114 EEWVCFVSAFWPICALIINVLWADILNNQVVK 19
           E W     A   + + +IN  W   LN Q+V+
Sbjct: 22  EYWPSVAPAATELISKLINAFWCQTLNGQLVE 53


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 40  FEQSSCQNKVPTI 2
           F++S CQ KVPT+
Sbjct: 239 FKKSKCQKKVPTL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,505
Number of Sequences: 5004
Number of extensions: 14949
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)