Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_K14
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    67   3e-12
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    67   3e-12
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical p...    27   3.9  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 26/30 (86%), Positives = 30/30 (100%)
 Frame = +3

Query: 105 PIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 194
           P+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 26/30 (86%), Positives = 30/30 (100%)
 Frame = +3

Query: 105 PIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 194
           P+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 221 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHP 123
           I F T T +   +C S ++ +  I  SV C++P
Sbjct: 72  IVFLTLTDMSATVCSSIISGVLYIKGSVFCSYP 104


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 209 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 93
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 209 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 93
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 305 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 344


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 209 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 93
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical
           protein F42A9.9 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 130 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 219
           A   +FD+T+ G   +GQ  +C L+ V+ +
Sbjct: 23  ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,204,963
Number of Sequences: 27780
Number of extensions: 85660
Number of successful extensions: 245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)