Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_K13
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 234 7e-63
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 234 9e-63
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 234 9e-63
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 128 7e-31
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 125 6e-30
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 75 9e-15
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 48 9e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.009
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.020
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.14
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 31 0.19
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 31 0.19
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.25
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.32
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.43
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.43
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.7
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 1.7
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.0
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 3.0
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 9.2
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 234 bits (573), Expect = 7e-63
Identities = 108/119 (90%), Positives = 113/119 (94%)
Frame = +3
Query: 210 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 389
HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85
Query: 390 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXAGISKNGQTREHALLAFTLG 566
VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEF AGISK+GQTREHALLA+TLG
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 134 MGKEKTHINIVVIGHVDSGKSTTTG 208
MGKEK HIN+VVIGHVDSGKSTTTG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTG 25
Score = 33.1 bits (72), Expect = 0.035
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 565 GVKQLIVGVNKMDSTEPPYSEPRFE 639
GVKQLIV VNKMD+T +S+ RFE
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFE 166
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 234 bits (572), Expect = 9e-63
Identities = 107/119 (89%), Positives = 113/119 (94%)
Frame = +3
Query: 210 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 389
HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85
Query: 390 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXAGISKNGQTREHALLAFTLG 566
VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF AGISK+GQTREHALLA+TLG
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 134 MGKEKTHINIVVIGHVDSGKSTTTG 208
MGKEK HIN+VVIGHVDSGKSTTTG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTG 25
Score = 33.1 bits (72), Expect = 0.035
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 565 GVKQLIVGVNKMDSTEPPYSEPRFE 639
GVKQLIV VNKMD+T +S+ RFE
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFE 166
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 234 bits (572), Expect = 9e-63
Identities = 107/119 (89%), Positives = 113/119 (94%)
Frame = +3
Query: 210 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 389
HLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85
Query: 390 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXAGISKNGQTREHALLAFTLG 566
VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF AGISK+GQTREHALLA+TLG
Sbjct: 86 NVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLG 144
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 134 MGKEKTHINIVVIGHVDSGKSTTTG 208
MGKEK HIN+VVIGHVDSGKSTTTG
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTG 25
Score = 33.1 bits (72), Expect = 0.035
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 565 GVKQLIVGVNKMDSTEPPYSEPRFE 639
GVKQLIV VNKMD+T +S+ RFE
Sbjct: 144 GVKQLIVAVNKMDTT--GWSQARFE 166
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 128 bits (309), Expect = 7e-31
Identities = 57/119 (47%), Positives = 82/119 (68%)
Frame = +3
Query: 210 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 389
++++ G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T+++ FET
Sbjct: 257 NILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 316
Query: 390 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXAGISKNGQTREHALLAFTLG 566
+++DAPGH+ ++ NMI G SQAD VL+++A GEF AG + GQTREHA+LA T G
Sbjct: 317 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG 375
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 146 KTHINIVVIGHVDSGKSTTTGS 211
K H+NIV IGHVD+GKST G+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGN 257
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 125 bits (301), Expect = 6e-30
Identities = 59/118 (50%), Positives = 76/118 (64%)
Frame = +3
Query: 213 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYY 392
++++ G I+ R+++K EA GKGSF YAW+LD + ER RG+T+D+A FE+ K
Sbjct: 197 IMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256
Query: 393 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFXAGISKNGQTREHALLAFTLG 566
I DAPGHRDFI MI G S AD AVL+V + F G +NGQTREHA L LG
Sbjct: 257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALG 314
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 146 KTHINIVVIGHVDSGKSTTTG 208
K +++VV GHVDSGKST G
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLG 195
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 74.9 bits (176), Expect = 9e-15
Identities = 40/97 (41%), Positives = 58/97 (59%)
Frame = +3
Query: 276 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 455
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 456 QADCAVLIVAAGTGEFXAGISKNGQTREHALLAFTLG 566
D A+++V+A G+ QTREH LLA +G
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVG 168
Score = 33.9 bits (74), Expect = 0.020
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 140 KEKTHINIVVIGHVDSGKSTTTGS 211
++K H+NI IGHVD GK+T T +
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTAA 72
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 565 GVKQLIVGVNKMDSTEPPYSE 627
GVKQ++V +NK+D EP E
Sbjct: 168 GVKQIVVYINKVDMVEPDMIE 188
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 48.4 bits (110), Expect = 9e-07
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 309 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 488
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 489 GTG 497
G
Sbjct: 127 SAG 129
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 158 NIVVIGHVDSGKSTTT 205
N+ +I H+D+GK+T T
Sbjct: 30 NVGIIAHIDAGKTTLT 45
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 312 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 479
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 480 VAAGTG 497
V A G
Sbjct: 155 VDASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.009
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 282 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 455
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 456 QADCAVLIVAAGTG 497
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.9 bits (74), Expect = 0.020
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Frame = +3
Query: 312 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 434
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 435 NMITGTSQADCAVLIVAAGTGEFXAGISKNGQTREH 542
+ D AVL++ A +G I+ + Q R +
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.14
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 390 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 485
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 128 PKMGKEKTHINIVVIGHVDSGKST 199
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 134 MGKEKTHINIVVIGHVDSGKSTTTGS 211
MGK N+ VI HVD GKST T S
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDS 38
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 387 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 482
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 134 MGKEKTHINIVVIGHVDSGKSTTTGS 211
MGK N+ VI HVD GKST T S
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDS 38
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 387 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 482
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 387 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 497
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 315 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 437
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.43
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 352 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 224
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 399 IIDAPGHRDFIKNMITGTSQADCAVLIV 482
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 330 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 482
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = -3
Query: 599 ILFTPTMSCLTPEGESEQGMLTGLTVLRDTSXE-FTGTGSYDEHSAISLRGSCDHVLDEI 423
+L P C T E GL L D + + +T T S SAI G H
Sbjct: 703 LLGHPITVCWTASPNHEINDWIGLYKLSDNASDLYTQTSSEGRWSAIDANGYTSHCSSIK 762
Query: 422 SVSRSINDGNI 390
S+S N G +
Sbjct: 763 SLSNDKNSGEV 773
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 376 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 245
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Frame = -2
Query: 342 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVC-----QYHHICRSNEPVVVDLPE 184
H+H PL P+P +L P P P S WY H S PV+ +LP+
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPK 191
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 276 PGPPSRTSRWYVCQYHHIC 220
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,986
Number of Sequences: 5004
Number of extensions: 49327
Number of successful extensions: 161
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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