Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J21
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    28   1.0  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.0  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   1.8  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.8  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   4.1  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   5.4  
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    25   9.5  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 612 RYTFYIQEMKSFDGAKRSKSYQTHRALFKSIQKIN 508
           RY +YI+ +K F    ++  + T    FKS + +N
Sbjct: 177 RYVYYIEILKQFPNYLKAVEFNTGTTFFKSFKCLN 211


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 71  GLREWIPKSPYIVYHSLA-SRYRSLYSEFSWLWHQI 175
           GL  WI  + ++ Y  L+   Y   +SE+ W W+ +
Sbjct: 244 GLAHWIKGAIFLWYGILSFGEYLGAFSEYGWAWNVV 279


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 39  LHIM-VSIVAPKVSENGFRNLRTLYITRWPVDTGPCIPNSHGFGTKY 176
           LH + +  +   +SE  F +LR++   R+P    P  P+ + FG  Y
Sbjct: 111 LHFVPIDALESHLSEASFPSLRSVLCERYPGLVSPEPPSDYSFGVHY 157


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -1

Query: 191 FYGQRIFGAKAMRIRNTGTGIDWPASDIQCTEISESILGDLWSYYRH 51
           +Y  ++F AK   + +  T          C  +    +G L+SY RH
Sbjct: 304 YYNTKLFAAKVHHLFDDPTSFQSKDGGFVCMLLLSMAMGSLFSYIRH 350


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/79 (20%), Positives = 33/79 (41%)
 Frame = -1

Query: 575 TVRSDLSLIKHIGHYSNQYRKLTKPYNVTQRTTTNAQNV*VYIQXXXLC*KKNYYKEDKR 396
           ++RS L L+KH   Y  Q           ++   +  N  +++Q      +   ++    
Sbjct: 558 SIRSKLQLLKHFKSYMGQNLSKAVQDESFEKPKNSTSNTMLFMQHYLRTRQAIMFRLSNG 617

Query: 395 IFFFRFLNIIVIINHNTTK 339
           IF F FL+   ++  +T +
Sbjct: 618 IFQFNFLDHRKVVISSTAR 636


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 504 TL*RNTTNDY*CTKCLSLYTITLIMLEKKLL 412
           TL RNT N     KCL +  +++++  K LL
Sbjct: 713 TLKRNTENTVAILKCLLIIPLSILLKSKNLL 743


>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 216 LNMRVSLHFLRPKNIWCQSHENSEYRDRYRL 124
           L + ++ H L PK+I     E  E  DRY+L
Sbjct: 135 LIVNITHHELVPKHILLSPDEKKELLDRYKL 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,284
Number of Sequences: 5004
Number of extensions: 48764
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)