Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J15
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   118   7e-28
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   118   7e-28
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    31   0.14 
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   7.1  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   9.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   9.4  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  118 bits (284), Expect = 7e-28
 Identities = 58/110 (52%), Positives = 69/110 (62%)
 Frame = +2

Query: 290 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 469
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 470 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRC 619
                              TYGKP   GVN LK  R+ +  AEERVGR C
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYC 110


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  118 bits (284), Expect = 7e-28
 Identities = 58/110 (52%), Positives = 69/110 (62%)
 Frame = +2

Query: 290 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 469
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 470 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRC 619
                              TYGKP   GVN LK  R+ +  AEERVGR C
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYC 110


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -2

Query: 186 HCENTETQYLLLKIGENFVPGVHLNLIFNIIVRY*IRISLVLKDL 52
           HC   +T +L+ KI E+++PG +   ++  ++   +  SLV + +
Sbjct: 318 HCTEEQTFFLMHKICEDYIPGYYSKTMYGTLIDQQVYESLVQRSM 362


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 263 LLGLPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTR 394
           L+G P A K      I  L +KK+ +V       +VWQY  L +
Sbjct: 315 LIGFPNAGKSSI---INTLRKKKVCNVAPIPGETKVWQYVALMK 355


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 356 LRVRVWQYRQLTRMHRAPRPTRPD 427
           L+  +W Y  L R++  PR   PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 272 DLATKSIQIDQKSHHRSGHRKGS 204
           DLATK++Q    SH R G  K +
Sbjct: 68  DLATKALQTLYNSHTREGETKAA 90


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 589 GLKVARGLQLVDTMALGLAISGTLSNW 509
           GL VA G Q  DT+ LG+ I   +S++
Sbjct: 93  GLTVALGPQFPDTLVLGMEIRMQVSDY 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,844
Number of Sequences: 5004
Number of extensions: 58137
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)