Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_J15
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 118 3e-27
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 116 1e-26
05_02_0037 + 5883285-5884292 31 0.60
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 0.79
05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254... 28 7.4
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 28 7.4
08_02_0491 + 17749763-17750143,17750694-17750751,17750846-177508... 27 9.7
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.7
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 118 bits (285), Expect = 3e-27
Identities = 57/109 (52%), Positives = 69/109 (63%)
Frame = +2
Query: 290 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 469
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 470 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRR 616
YGKPK G+ QLK RN +S+AEER GR+
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRK 109
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 116 bits (280), Expect = 1e-26
Identities = 56/108 (51%), Positives = 68/108 (62%)
Frame = +2
Query: 293 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 472
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 473 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRR 616
YGKPK G+ QLK RN +S+AEER GR+
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRK 214
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 373 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 525
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 601 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 473
+++ G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>05_07_0010 -
27024013-27024171,27024286-27024699,27025389-27025445,
27025544-27025637,27025775-27025868,27025949-27026117,
27026450-27026554,27026665-27026784,27027190-27027735
Length = 585
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -1
Query: 631 RRPPATTANTF--LSNGLKVARGLQLVDTMALGL 536
RRPPATTA +F ++ L G QLV+ + +GL
Sbjct: 25 RRPPATTAASFRPVTAELGGELGRQLVEAVGVGL 58
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 622 PATTANTFLSNGLKVARGLQLVDTMALGLAIS-GTLSNWTLAATTSH 485
P+ T T L NG+K+A + +++GL I G++ + ++ TSH
Sbjct: 119 PSKTKITTLPNGIKIASETSPIPAVSVGLYIDCGSVYETSSSSGTSH 165
>08_02_0491 +
17749763-17750143,17750694-17750751,17750846-17750891,
17750932-17750998,17751100-17751108
Length = 186
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 212 FCGQTDDVTSDQFVLILLLGLPQAAKMGAYRYIQELYRKKLSD--VMRFLLRVRV 370
FC ++ DQ VL LLL + +A + + +Q+ K LSD + R + +V +
Sbjct: 106 FCNSFKEIQRDQRVLYLLLHVSKAGSLFNF-IVQQFALKYLSDCIIARHVCKVNI 159
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 496 WPQASSC*G-CHLWQAQEPWCQPVEAH 573
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,376,538
Number of Sequences: 37544
Number of extensions: 389372
Number of successful extensions: 834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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