Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J13
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0098 - 12844631-12845074,12845329-12846570                       49   3e-06
08_01_0178 - 1509100-1511214                                           28   5.4  
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    28   5.4  
11_06_0462 + 23871596-23872150                                         27   7.1  
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656...    27   9.4  

>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
 Frame = +1

Query: 328 LCTARPTWQTMSFRHSMYKRTFTNIQINLX---DVLEVDKENMTVRCEPLVTMGQLSR 492
           +CTAR  W  +  R+  YKR   + +++L    ++LE+D+E M  + EPLV MGQ++R
Sbjct: 85  VCTARKPWIAVGMRNVDYKRA-RHFEVDLSAFRNILEIDRERMVAKVEPLVNMGQITR 141


>08_01_0178 - 1509100-1511214
          Length = 704

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 520 AAPSXAAPMCGTADPSSL 467
           AAP+ + PMCG+A P SL
Sbjct: 634 AAPTWSMPMCGSAAPPSL 651


>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
            40479205-40480047,40480176-40480269,40480356-40481207,
            40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 273  KEVQRQIKEWLSGEQVDSSLHSPANMANNVFSTQHVQEDIY 395
            ++ Q+ I E +  +Q+ +S   P NM + V   +HV  D++
Sbjct: 904  QQQQQLILEQMLQQQLQASNFGPTNMVDQVLLREHVLNDLH 944


>11_06_0462 + 23871596-23872150
          Length = 184

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 275 RGSKTDKRMVIRGTSRLISA-QPGQHGKQCLFDTACTRGHLPTY 403
           R S T   + + G S L+   QPG+H   C+FD       L  Y
Sbjct: 20  RPSTTSHVLRVDGYSHLVGVLQPGEHVDSCVFDAGGHSWRLQLY 63


>04_01_0501 -
           6558120-6559312,6559441-6559518,6559818-6559877,
           6560000-6560083,6560407-6560566
          Length = 524

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 379 YKRTFTNIQINLXDVLEVDKENMTVRCEPLVTMGQLSR 492
           Y+R F+ I  +    LE D +   VRC P V +G  SR
Sbjct: 272 YRRIFSQISRHDIVDLEKDDDRGVVRCYPHVVVGYGSR 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,549
Number of Sequences: 37544
Number of extensions: 301919
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)