Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J13
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.48 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 237 MNSAPKMHDDKVKEVQRQIKEWLSG--EQVDSSLHSPANMANNVFST 371
           +  A K H D ++  QR  K  L+   +  D++L S  N+ NNV+ST
Sbjct: 366 VTGASKSHGD-LELRQRSSKSLLANVLDLEDNALASHNNLLNNVYST 411


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 192 AWKLWSIIRNYVVFKMNS 245
           +W   S+IRNY +F  NS
Sbjct: 274 SWVNTSVIRNYTLFNENS 291


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 86  VESNSSGISPQYYISYNVFITP 21
           V+   SGISP+ Y+  N+ I+P
Sbjct: 514 VDQQLSGISPRNYMYPNIDISP 535


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 267 KVKEVQRQIKEWLSGEQVDSSLHSPANMANNVFSTQHVQEDIYQHTN 407
           K +   R+ +E     ++ SSL +  N +NN ++  + ++ +Y + N
Sbjct: 286 KERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKK-LYYNIN 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,686
Number of Sequences: 438
Number of extensions: 3056
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)