Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J12
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    69   4e-13
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    69   6e-13
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   9.0  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   9.0  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   9.0  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 33/65 (50%), Positives = 35/65 (53%)
 Frame = +2

Query: 50  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 230 FHFSK 244
           FH  K
Sbjct: 61  FHLMK 65



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 38/86 (44%)
 Frame = +3

Query: 237 LVKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 416
           L+KN  + P +NLD+LWTLV  +TR KY        PVIN++++           P  PV
Sbjct: 63  LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPV 122

Query: 417 IVXXXXXXXXXXXXXXDVGGACVLSA 494
           I+                GG   L A
Sbjct: 123 IIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 68.5 bits (160), Expect = 6e-13
 Identities = 33/65 (50%), Positives = 35/65 (53%)
 Frame = +2

Query: 50  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 230 FHFSK 244
           FH  K
Sbjct: 61  FHLMK 65



 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = +3

Query: 237 LVKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 416
           L+KN  + P +NLD+LWTL+  + R KY        PVIN++++           P+ PV
Sbjct: 63  LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPV 122

Query: 417 IVXXXXXXXXXXXXXXDVGGACVLSA 494
           IV                GG   L A
Sbjct: 123 IVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 300 QRLMSKAYLSSKLDRNSCSLLKWKFLIPSLPKYPGW 193
           ++ + K ++S    +NSCSL  W  LI S  K  GW
Sbjct: 307 EQFLDKVFISLLSAKNSCSLKMW--LIHSFNK--GW 338


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 270 NLDKLWTLVSEQTRLKYASAPDGKVP 347
           NL K W  +S     K++  P+G +P
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 306 SVQRLMSKAYLSSKLDRNSCSLLKWKFLIPSLPKY 202
           + +RL++++YL S L  +S S  +   L  S+PK+
Sbjct: 332 AARRLVARSYLRSPLHGSSPSASRHTALRTSIPKF 366


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 362 DNIDDGDLAIWSRCILQPRL 303
           DN+D+ DLA +S+ I +P L
Sbjct: 2   DNLDEDDLAFFSKPIKKPPL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,797
Number of Sequences: 5004
Number of extensions: 39436
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)