Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J07
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = +3

Query: 480 IPYAAFLKKVMAXKTSQLVISLXIRSFPATNVRW 581
           +PY   + KV A     L +   +  +P   ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = +3

Query: 480 IPYAAFLKKVMAXKTSQLVISLXIRSFPATNVRW 581
           +PY   + KV A     L +   +  +P   ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 208 RETRWYKEEGREAAHTRRVPSHLQPSKERQRPXQRMKIS 324
           RE   YK E     +  R     +  +ER+R  +R  IS
Sbjct: 45  REQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIIS 83


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 208 RETRWYKEEGREAAHTRRVPSHLQPSKERQRPXQRMKIS 324
           RE   YK E     +  R     +  +ER+R  +R  IS
Sbjct: 45  REQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIIS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,527
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)