Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J06
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    85   4e-18
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    23   9.6  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 84.6 bits (200), Expect = 4e-18
 Identities = 36/64 (56%), Positives = 49/64 (76%)
 Frame = +3

Query: 39  NNQIRIIITATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSF 218
           + +IR+I+T+ DVIHS  +PSLG+K D  P RLNQ +  I+R G+F+GQCSE+CG  HS 
Sbjct: 168 DTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSS 227

Query: 219 IPIV 230
           +PIV
Sbjct: 228 MPIV 231


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 188 FRNLWS*S*FYTYCN*KYFNQKL 256
           F N+W  S  YTYC    FN+ L
Sbjct: 200 FSNIWVYSNNYTYCKYWPFNEIL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 957,944
Number of Sequences: 5004
Number of extensions: 15568
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)