Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J04
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo...    42   4e-05
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   3.0  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   5.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.9  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   6.9  

>SPAC19A8.09 |||ER to Golgi transport protein
           Yos1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 81

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 18/38 (47%), Positives = 29/38 (76%)
 Frame = +1

Query: 304 QSSMKFQILNLVRSIRTVTKIPLIILNILTIMFKLLLG 417
           Q ++K +IL+L+R+IRTV   PLI +N + I++ L+LG
Sbjct: 44  QDTIKSRILHLIRAIRTVMTFPLIAINTIVIVYNLVLG 81



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 174 MLTLWNLFEATLLCLNAVCVLHEERFMQKIGW 269
           M    N+   TLL LNAV +L E+RF+ +IGW
Sbjct: 1   MFGFGNILYVTLLLLNAVAILSEDRFLGRIGW 32


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 339 EVN*NSYKDSSHHTQYPDNNVQTVTG 416
           EVN NSY      T Y D   Q+VTG
Sbjct: 334 EVNVNSYNGGIPSTSYNDTPQQSVTG 359


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 422 HYPSNSLNIIVRILSMMRGIFVTVLIDL-TKLRIWNFIED 306
           H+P  S+N +   +S MR I V ++I L  +L++     D
Sbjct: 506 HFPQTSMNTLNTFISTMRLITVILMIPLDPRLKVLGISRD 545


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 321 EFHRRLIFKXPGFGYLLPSQFSA*IFLRVIHI 226
           + H+ L+   P  GYLLP    A + + +IH+
Sbjct: 193 QVHKTLVSAGPWTGYLLPFTGIAGLCIPIIHL 224


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 18/85 (21%), Positives = 40/85 (47%)
 Frame = +1

Query: 133 YINLVN*DHNRKEICSLYGIYLKQHCYVSTQYVYYTKKDSCRKLAGEQIPKPRXFEDQSS 312
           Y++++   +N  ++  +  I+L       ++++   KK+ C+KL    +P  + F     
Sbjct: 366 YLHIIRDHYNLSDLADVQAIFL-------SRFILLRKKEDCKKLLEHVLPIRQLFLLNC- 417

Query: 313 MKFQILNLVRSIRTVTKIPLIILNI 387
             + +LN++ +   V K  LI   I
Sbjct: 418 --YSLLNVLANYVVVFKDRLIFQEI 440


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 425 VHYPSNS----LNIIVRILSMMRGIFVTVLIDLTKLRIWNFIED*SSKXLGLGI 276
           VHY S +    ++      S   G F+ +LI LTK   W F+       LG G+
Sbjct: 396 VHYTSITAAGYISYTYSFTSCATGFFLGILIRLTKRYKWYFVASIPVYILGQGL 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,997
Number of Sequences: 5004
Number of extensions: 32890
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)