Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J04
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0461 + 9577003-9577065,9577471-9577568,9578339-9578394,957...    36   0.026
03_02_0890 + 12202056-12202152,12202527-12202765                       31   0.43 
06_01_0629 - 4582045-4582140,4582218-4582480,4582584-4582704,458...    29   2.3  
06_01_0619 - 4501296-4501561,4501664-4501784,4501915-4502253,450...    29   2.3  
03_02_0833 + 11624018-11624062,11624156-11624193,11624310-116243...    28   4.0  
06_01_0627 - 4567304-4567521,4567649-4567727,4567827-4568165,456...    27   9.2  

>09_02_0461 +
           9577003-9577065,9577471-9577568,9578339-9578394,
           9578446-9578672,9578956-9579045
          Length = 177

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 183 LWNLFEATLLCLNAVCVLHEERFMQKIGW 269
           LW L E  LL  NA+ +L+E+RF+   GW
Sbjct: 76  LWTLLEGFLLLANALAILNEDRFLGPRGW 104



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +1

Query: 310 SMKFQILNLVRSIRTVTKIPLIILNILTIMFKL 408
           S+K QI+ L+ + + + ++PLI LN+L I+ KL
Sbjct: 117 SLKGQIVGLIYATQFL-RMPLIALNVLIIVVKL 148


>03_02_0890 + 12202056-12202152,12202527-12202765
          Length = 111

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 186 WNLFEATLLCLNAVCVLHEERFMQKIGW 269
           W   E  L+  NA+ +L+E+RF+   GW
Sbjct: 37  WPFLEGLLILANALAILNEDRFLAPRGW 64



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +1

Query: 310 SMKFQILNLVRSIRTVTKIPLIILNILTIMFKLLLG 417
           S+K QI+ L+ + +   ++PLI LN+L I+ KL+ G
Sbjct: 77  SLKGQIVGLIYATQFF-RMPLIALNVLIIVVKLVSG 111


>06_01_0629 -
           4582045-4582140,4582218-4582480,4582584-4582704,
           4582833-4583171,4583208-4583245,4583355-4583670,
           4583753-4584006,4586417-4586546
          Length = 518

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 342 PHQVKNLEFHRRLIFKXPGFGYLLPSQF 259
           PH  K  +  +R I+K PGFG++ P  F
Sbjct: 339 PHYQKEFQMLKR-IYKTPGFGFVFPPGF 365


>06_01_0619 -
           4501296-4501561,4501664-4501784,4501915-4502253,
           4502290-4502327,4502673-4502757,4502840-4503093,
           4503868-4503961
          Length = 398

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 342 PHQVKNLEFHRRLIFKXPGFGYLLPSQF 259
           PH  K  +  +R I+K PGFG++ P  F
Sbjct: 250 PHYQKEFQMLKR-IYKTPGFGFVFPPGF 276


>03_02_0833 +
           11624018-11624062,11624156-11624193,11624310-11624376,
           11624770-11624887,11625361-11625507,11626178-11626221,
           11627739-11627861
          Length = 193

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 208 CYVSTQYVYYTKKDSCRKLAGEQIPKPRXFE 300
           C +   +VY T   +C  LA E+IP P+ ++
Sbjct: 84  CDLYVTFVYGTPTSNCLSLAREEIPGPKGYK 114


>06_01_0627 -
           4567304-4567521,4567649-4567727,4567827-4568165,
           4568202-4568239,4568462-4568837
          Length = 349

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 342 PHQVKNLEFHRRLIFKXPGFGYLLPSQF 259
           PH     +  +R I+K PGFG++ P  F
Sbjct: 231 PHYENEFQMLKR-IYKTPGFGFVFPPGF 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,357,195
Number of Sequences: 37544
Number of extensions: 176990
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)