Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J04
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82080-6|CAE45090.1|   80|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z82080-6|CAE45090.1|   80|Caenorhabditis elegans Hypothetical
           protein W09G3.8 protein.
          Length = 80

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/41 (43%), Positives = 34/41 (82%)
 Frame = +1

Query: 295 FEDQSSMKFQILNLVRSIRTVTKIPLIILNILTIMFKLLLG 417
           F+  +S+K Q+++L+ +++TV ++PLI +NI+ I+FKL+LG
Sbjct: 40  FDGSNSVKDQLVSLIFAVQTVMRMPLIAINIVVIVFKLILG 80



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +3

Query: 177 LTLWNLFEATLLCLNAVCVLHEERFMQKIGWGANTQTQGL*RSIFDEI 320
           L+ + L EA LL LN + +LH ERF++K G GA + +     S+ D++
Sbjct: 3   LSFYALLEAALLVLNGIAILHRERFLKKYGLGAPSHSFDGSNSVKDQL 50


>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/52 (17%), Positives = 30/52 (57%)
 Frame = +2

Query: 113 VVTTLVFTSTWSTKIIIGKKYAHFMEFI*SNIVMSQRSMCITRRKIHAENWL 268
           +++  V++    T+ I+G+K  + +  + + ++++  +  +  R++ A +WL
Sbjct: 314 IISATVYSILGYTRFILGRKSVYDLTVLPNGLLLTHSTFPVLLRQVAANSWL 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,878,565
Number of Sequences: 27780
Number of extensions: 181948
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)