Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I23
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.19 
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.1  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   4.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.2  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   9.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 120 YMMGLITGLIKRLLKLALYIAVFAIAVVLIPNIPPYTKFSSIKLEPTKPRTGILESN-GL 296
           Y  G I G I + L  A+ +   A      P++ P       K+EP +   GIL  N G 
Sbjct: 575 YERGFI-GDIYQFLYNAVNVGSVAFDATFFPSLLPKKTMDGSKIEPPESSKGILNVNLGC 633

Query: 297 LNNAEQL 317
           +NN  +L
Sbjct: 634 VNNLTEL 640


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -3

Query: 348 MLLVPAISLYIVVQHYLEAH---SIP-IYLF*ALWV 253
           +LL+PA+   I +  Y+E H   SIP I++F  L+V
Sbjct: 64  LLLIPALFTLIWIYKYIEPHSLISIPGIFVFLGLYV 99


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 268 EQVYWNRMGF*IMLNNYIK-GNCW 336
           E++Y N+ GF I  NNY +  NC+
Sbjct: 304 EKIYMNKDGFYITFNNYREASNCY 327


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 418  PPAVSFTISPVAKLVYNSPLKVWNASGPSNFPLYSCSALFRSPFDSNIPVLGFVGS 251
            PPA    ++PV      +P  V NA  PS+ P          P   N+PV   + S
Sbjct: 1448 PPAPMHAVAPVQP---KAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPS 1500


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 349 NASGPSNFPLYSCSALFRSPFDSNIPVLGFVGS 251
           N+S  +N  LY+      SP  SN+P+  F+ S
Sbjct: 148 NSSSDTNSILYAGPTFTHSPAASNLPIPTFLHS 180


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 132 LITGLIKRLLKLALYIAVFAIAVVL 206
           LI   IKRL +LAL     AIA+V+
Sbjct: 342 LIASFIKRLARLALTAPPGAIAIVI 366


>SPCC1795.08c |||histone acetyltransferase complex subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 183  VFAIAVVLIPNIPPYTKFSSIKLEP 257
            V  IA  ++P + PY   SS+KL P
Sbjct: 941  VSPIAGRMVPRLQPYAVSSSLKLTP 965


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,036
Number of Sequences: 5004
Number of extensions: 42350
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)