Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_I18
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    45   1e-05
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     44   2e-05
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     44   3e-05
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908...    27   4.0  
04_04_0509 - 25763685-25764293                                         26   9.3  

>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +1

Query: 10  LDPLTVLVENYSSSTCRVKSKIS-KTF*LRRGGKTPNRSK*RRTL*NVKFKXSMLKXSXY 186
           +DP+ VLV   ++   + K     K F L    K     + +RT   VKFK    K   Y
Sbjct: 15  IDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKY-LY 73

Query: 187 TLVITDKEKAEKLKQSLPPGL 249
           TL + D +KA KLKQSLPPGL
Sbjct: 74  TLCVFDADKANKLKQSLPPGL 94



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 17/26 (65%), Positives = 24/26 (92%)
 Frame = +3

Query: 57  PREIKDIKDFLIKARRKDAKSVKIKK 134
           P++I +IKDFL+ ARRKDA+SV+IK+
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKR 57


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 26/28 (92%)
 Frame = +3

Query: 54  MPREIKDIKDFLIKARRKDAKSVKIKKN 137
           MP++I +IKDFL+ ARRKDA+SV+IK++
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRS 28



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 25/57 (43%), Positives = 31/57 (54%)
 Frame = +1

Query: 79  KTF*LRRGGKTPNRSK*RRTL*NVKFKXSMLKXSXYTLVITDKEKAEKLKQSLPPGL 249
           K F L    K     + +R+   VKFK    +   YTL + D +KA KLKQSLPPGL
Sbjct: 9   KDFLLTARRKDARSVRIKRSKDAVKFKVRCSRY-LYTLCVHDTDKANKLKQSLPPGL 64


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +3

Query: 54  MPREIKDIKDFLIKARRKDAKSVKIKK 134
           MP++I +IKDFL+ ARRKDA+SV+IK+
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKR 27



 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 27/57 (47%), Positives = 31/57 (54%)
 Frame = +1

Query: 79  KTF*LRRGGKTPNRSK*RRTL*NVKFKXSMLKXSXYTLVITDKEKAEKLKQSLPPGL 249
           K F L    K     + +RT   VKFK    K   YTL + D +KA KLKQSLPPGL
Sbjct: 9   KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKY-LYTLCVFDADKANKLKQSLPPGL 64


>09_05_0016 +
           20089545-20089748,20090072-20090263,20090644-20090814,
           20090915-20091096,20091189-20091435,20091776-20091908,
           20092070-20092599,20092940-20093170
          Length = 629

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -2

Query: 227 LSFSAFSLSVMTRVXQEXLSIEXLNLTFYRVLLYFDRFGVFP 102
           LSF   S S   R       +  L   F+R L  F + G FP
Sbjct: 32  LSFWVVSHSAAIRARSPHARLPHLRTLFFRTLSLFSKMGAFP 73


>04_04_0509 - 25763685-25764293
          Length = 202

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 66  IKDIKDFLIKARRKDAKSVKIKKNPVECQVQGFDAQGFLXHPGH 197
           ++++++   +AR    +  K KK P + Q+QG D+ G   H  H
Sbjct: 149 LREVREHQARARGVSYEKKKRKK-PQQQQLQGGDSSGLHGHQHH 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,060,287
Number of Sequences: 37544
Number of extensions: 81358
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)